Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022912 Sechium edule HOM05D003334 ORTHO05D022509 1.5e-45 185.7 86 100.0
Sed0023632 Sechium edule HOM05D003334 ORTHO05D004076 4.8e-23 110.9 247 32.8
unitig_32.g11639 Utricularia gibba HOM05D003334 ORTHO05D004076 5.2e-17 90.9 64 65.6
Rhsim12G0003500 Rhododendron simsii HOM05D003334 ORTHO05D004076 8.8e-17 90.1 64 65.6
ECA238G1984 Erigeron canadensis HOM05D003334 ORTHO05D004076 1.2e-16 89.7 67 64.2
Atru.chr7.238 Acer truncatum HOM05D003334 ORTHO05D004076 1.5e-16 89.4 64 64.1
ClCG09G011880 Citrullus lanatus HOM05D003334 ORTHO05D004076 1.5e-16 89.4 249 29.7
Nn1g02302 Nelumbo nucifera HOM05D003334 ORTHO05D004076 1.5e-16 89.4 228 28.9
AUR62009179 Chenopodium quinoa HOM05D003334 ORTHO05D004076 2.0e-16 89.0 153 35.3
CsaV3_5G014480 Cucumis sativus L. HOM05D003334 ORTHO05D004076 2.0e-16 89.0 249 29.7
Lj7A725T58 Lonicera japonica HOM05D003334 ORTHO05D004076 2.6e-16 88.6 64 65.6
Sed0014785 Sechium edule HOM05D003334 ORTHO05D004076 2.6e-16 88.6 250 29.2
Dinv04743 Davidia involucrata HOM05D003334 ORTHO05D004076 3.4e-16 88.2 64 64.1
Thecc.09G264900 Theobroma cacao HOM05D003334 ORTHO05D004076 3.4e-16 88.2 64 65.6
FvH4_4g11950 Fragaria vesca HOM05D003334 ORTHO05D004076 4.4e-16 87.8 69 62.3
FAN12G4063 Fragaria x ananassa HOM05D003334 ORTHO05D004076 4.4e-16 87.8 69 62.3
FAN17G0794 Fragaria x ananassa HOM05D003334 ORTHO05D004076 4.4e-16 87.8 69 62.3
FAN22G0185 Fragaria x ananassa HOM05D003334 ORTHO05D004076 4.4e-16 87.8 69 62.3
MD04G1236500 Malus domestica HOM05D003334 ORTHO05D004076 4.4e-16 87.8 69 62.3
RcHm_v2.0_Chr3g0493481 Rosa chinensis HOM05D003334 ORTHO05D004076 4.4e-16 87.8 69 62.3
RcHm_v2.0_Chr7g0223011 Rosa chinensis HOM05D003334 ORTHO05D004076 4.4e-16 87.8 69 62.3
Migut.E01397 Erythranthe guttata HOM05D003334 ORTHO05D004076 5.7e-16 87.4 64 64.1
FAN07G2734 Fragaria x ananassa HOM05D003334 ORTHO05D004076 5.7e-16 87.4 69 60.9
GSVIVG01020576001 Vitis vinifera HOM05D003334 ORTHO05D004076 5.7e-16 87.4 69 62.3
Glyma.13G008200 Glycine max HOM05D003334 ORTHO05D004076 7.5e-16 87.0 67 61.2
MBI07_g42069_MAGBIO Magnolia biondii HOM05D003334 ORTHO05D004076 7.5e-16 87.0 64 64.1
Psat2g164840 Pisum sativum HOM05D003334 ORTHO05D004076 7.5e-16 87.0 65 63.1
Psat4g222840 Pisum sativum HOM05D003334 ORTHO05D004076 7.5e-16 87.0 65 63.1
PGR119G1638 Punica granatum HOM05D003334 ORTHO05D004076 7.5e-16 87.0 64 64.1
TAR365G0738 Trochodendron aralioides HOM05D003334 ORTHO05D004076 7.5e-16 87.0 64 64.1
CANSAT54G0453 Cannabis sativa HOM05D003334 ORTHO05D004076 9.8e-16 86.7 242 28.1
Ciclev10008518m.g Citrus clementina HOM05D003334 ORTHO05D004076 9.8e-16 86.7 64 64.1
Thhalv10020864m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 9.8e-16 86.7 247 27.5
Glyma.03G108900 Glycine max HOM05D003334 ORTHO05D004076 9.8e-16 86.7 67 61.2
Gohir.A09G104500 Gossypium hirsutum HOM05D003334 ORTHO05D004076 9.8e-16 86.7 64 64.1
Gohir.D09G101200 Gossypium hirsutum HOM05D003334 ORTHO05D004076 9.8e-16 86.7 64 64.1
Gorai.006G118600 Gossypium raimondii HOM05D003334 ORTHO05D004076 9.8e-16 86.7 64 64.1
Manes.12G077800 Manihot esculenta HOM05D003334 ORTHO05D004076 9.8e-16 86.7 64 64.1
TAR636G1778 Trochodendron aralioides HOM05D003334 ORTHO05D004076 9.8e-16 86.7 64 64.1
Cpa.g.sc1142.2 Carica papaya HOM05D003334 ORTHO05D004076 1.3e-15 86.3 64 64.1
HanXRQChr17g0559071 Helianthus annuus HOM05D003334 ORTHO05D004076 1.3e-15 86.3 64 64.1
Peaxi162Scf00213g01416 Petunia axillaris HOM05D003334 ORTHO05D004076 1.3e-15 86.3 64 64.1
Prupe.7G057800 Prunus persica HOM05D003334 ORTHO05D004076 1.3e-15 86.3 69 60.9
MD12G1255800 Malus domestica HOM05D003334 ORTHO05D004076 1.7e-15 85.9 69 60.9
Hund21749 Selenicereus undatus HOM05D003334 ORTHO05D004076 1.7e-15 85.9 64 62.5
arahy.Tifrunner.gnm1.ann1.GB3JX0 Arachis hypogaea HOM05D003334 ORTHO05D004076 2.2e-15 85.5 65 61.5
arahy.Tifrunner.gnm1.ann1.L2SHRD Arachis hypogaea HOM05D003334 ORTHO05D004076 2.2e-15 85.5 65 61.5
Ca_14800_v3 Cicer arietinum L. HOM05D003334 ORTHO05D004076 2.2e-15 85.5 65 61.5
Eucgr.B01376 Eucalyptus grandis HOM05D003334 ORTHO05D004076 2.2e-15 85.5 64 62.5
Eucgr.B01628 Eucalyptus grandis HOM05D003334 ORTHO05D004076 2.2e-15 85.5 64 62.5
Lalb_Chr21g0312861 Lupinus albus HOM05D003334 ORTHO05D004076 2.2e-15 85.5 65 61.5
Phvul.010G046300 Phaseolus vulgaris HOM05D003334 ORTHO05D004076 2.2e-15 85.5 65 61.5
Prupe.7G057000 Prunus persica HOM05D003334 ORTHO05D004076 2.2e-15 85.5 69 60.9
SalBow8G4285 Salvia bowleyana HOM05D003334 ORTHO05D004076 2.2e-15 85.5 64 62.5
THA.LOC104802839 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 2.2e-15 85.5 246 28.9
VMungo0331G0230 Vigna mungo HOM05D003334 ORTHO05D004076 2.2e-15 85.5 65 61.5
ATR0743G002 Amborella trichopoda HOM05D003334 ORTHO05D004076 2.8e-15 85.1 64 62.5
Dinv27617 Davidia involucrata HOM05D003334 ORTHO05D004076 2.8e-15 85.1 64 62.5
COL.COLO4_25317 Corchorus olitorius HOM05D003334 ORTHO05D004076 3.7e-15 84.7 64 62.5
CSS0022391 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 4.8e-15 84.3 64 62.5
MELO3C016671.2 Cucumis melo HOM05D003334 ORTHO05D004076 4.8e-15 84.3 63 69.8
Os12g0540900 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 4.8e-15 84.3 64 62.5
Aqoxy7G03650 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 6.3e-15 84.0 64 59.4
Hma1.2p1_0123F.1_g058080 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 6.3e-15 84.0 64 62.5
TPR.G5320 Trifolium pratense HOM05D003334 ORTHO05D004076 6.3e-15 84.0 65 60.0
MSTRG.11832 Avicennia marina HOM05D003334 ORTHO05D004076 8.3e-15 83.6 64 60.9
CSS0036286 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 8.3e-15 83.6 64 62.5
HanXRQChr11g0333651 Helianthus annuus HOM05D003334 ORTHO05D004076 8.3e-15 83.6 64 62.5
Oeu044972.2 Olea europaea HOM05D003334 ORTHO05D004076 8.3e-15 83.6 64 60.9
Potri.009G159300 Populus trichocarpa HOM05D003334 ORTHO05D004076 8.3e-15 83.6 246 26.0
Nitab4.5_0003036g0010 Nicotiana tabacum HOM05D003334 ORTHO05D004076 1.1e-14 83.2 64 60.9
TWI34G0756 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 1.1e-14 83.2 64 60.9
Carub.0003s0375 Capsella rubella HOM05D003334 ORTHO05D004076 1.4e-14 82.8 246 26.8
CiPaw.07G196900 Carya illinoinensis HOM05D003334 ORTHO05D004076 1.4e-14 82.8 65 60.0
Lsat_1_v5_gn_2_16301 Lactuca sativa HOM05D003334 ORTHO05D004076 1.4e-14 82.8 64 60.9
Medtr8g007305 Medicago truncatula HOM05D003334 ORTHO05D004076 1.4e-14 82.8 67 58.2
AL3G14620 Arabidopsis lyrata HOM05D003334 ORTHO05D004076 1.8e-14 82.4 246 26.8
AT3G04600 Arabidopsis thaliana HOM05D003334 ORTHO05D004076 1.8e-14 82.4 246 26.8
CARHR078790 Cardamine hirsuta HOM05D003334 ORTHO05D004076 1.8e-14 82.4 64 62.5
PSO063G6945 Papaver somniferum HOM05D003334 ORTHO05D004076 1.8e-14 82.4 64 62.5
PSO170G1996 Papaver somniferum HOM05D003334 ORTHO05D004076 1.8e-14 82.4 64 62.5
Hund21807 Selenicereus undatus HOM05D003334 ORTHO05D022509 1.8e-14 82.4 60 63.3
Hund21808 Selenicereus undatus HOM05D003334 ORTHO05D004076 1.8e-14 82.4 60 63.3
TWI15G0949 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 1.8e-14 82.4 64 60.9
Oeu028097.1 Olea europaea HOM05D003334 ORTHO05D004076 2.4e-14 82.0 232 27.6
QL06p038393 Quercus lobata HOM05D003334 ORTHO05D004076 2.4e-14 82.0 65 60.0
Sabra09G0124600 Salix brachista HOM05D003334 ORTHO05D004076 2.4e-14 82.0 246 25.6
Zm00001eb054210 Zea mays HOM05D003334 ORTHO05D004076 2.4e-14 82.0 64 62.5
CDE08G0778 Ceratophyllum demersum HOM05D003334 ORTHO05D004076 3.1e-14 81.6 64 59.4
Duzib168G1687 Durio zibethinus HOM05D003334 ORTHO05D004076 3.1e-14 81.6 64 60.9
Lj3g0011249 Lotus japonicus HOM05D003334 ORTHO05D004076 3.1e-14 81.6 65 58.5
Cfa013451 Carpinus fangiana HOM05D003334 ORTHO05D004076 5.4e-14 80.9 65 58.5
Sc06g0005180 Simmondsia chinensis HOM05D003334 ORTHO05D004076 5.4e-14 80.9 58 67.2
Actinidia29400 Actinidia chinensis HOM05D003334 ORTHO05D004076 7.0e-14 80.5 55 67.3
Aqoxy7G02117 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 9.1e-14 80.1 64 57.8
BolC3t16362H Brassica oleracea HOM05D003334 ORTHO05D004076 9.1e-14 80.1 64 60.9
Nitab4.5_0009273g0030 Nicotiana tabacum HOM05D003334 ORTHO05D004076 9.1e-14 80.1 44 77.3
CAN.G195.16 Capsicum annuum HOM05D003334 ORTHO05D004076 1.2e-13 79.7 58 62.1
Haze_07729 Corylus avellana HOM05D003334 ORTHO05D004076 1.2e-13 79.7 38 89.5
Duzib170G0367 Durio zibethinus HOM05D003334 ORTHO05D004076 1.2e-13 79.7 38 89.5
Solyc08g074410.4 Solanum lycopersicum HOM05D003334 ORTHO05D004076 1.2e-13 79.7 60 60.0
PGSC0003DMG400029565 Solanum tuberosum HOM05D003334 ORTHO05D004076 1.2e-13 79.7 60 60.0
Aa31LG5G20570 Aethionema arabicum HOM05D003334 ORTHO05D004076 1.6e-13 79.3 38 89.5
SGA_v2.0_scaffold269G46296 Striga asiatica HOM05D003334 ORTHO05D004076 1.6e-13 79.3 65 61.5
THA.LOC104821663 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 1.6e-13 79.3 64 64.1
vmacro00932 Vaccinium macrocarpon HOM05D003334 ORTHO05D004076 1.6e-13 79.3 76 52.6
Nitab4.5_0006136g0020 Nicotiana tabacum HOM05D003334 ORTHO05D004076 2.0e-13 79.0 44 75.0
BcaC01g04365 Brassica carinata HOM05D003334 ORTHO05D004076 2.7e-13 78.6 233 27.5
Thhalv10004344m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 2.7e-13 78.6 55 67.3
Aa31LG5G15020 Aethionema arabicum HOM05D003334 ORTHO05D004076 3.5e-13 78.2 38 86.8
BcaC09g47791 Brassica carinata HOM05D003334 ORTHO05D004076 3.5e-13 78.2 56 64.3
BolC1t05738H Brassica oleracea HOM05D003334 ORTHO05D004076 3.5e-13 78.2 56 64.3
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 3.5e-13 78.2 45 75.6
Sp3g03440 Schrenkiella parvula HOM05D003334 ORTHO05D004076 4.5e-13 77.8 55 65.5
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 4.5e-13 77.8 60 58.3
BcaB04g19317 Brassica carinata HOM05D003334 ORTHO05D004076 5.9e-13 77.4 60 60.0
BcaC01g04366 Brassica carinata HOM05D003334 ORTHO05D004076 5.9e-13 77.4 55 65.5
C03p40860 Brassica napus HOM05D003334 ORTHO05D004076 5.9e-13 77.4 55 65.5
BolC3t16357H Brassica oleracea HOM05D003334 ORTHO05D004076 5.9e-13 77.4 55 65.5
BolC3t16365H Brassica oleracea HOM05D003334 ORTHO05D004076 5.9e-13 77.4 55 65.5
SEGI_21996 Sequoiadendron giganteum HOM05D003334 ORTHO05D004076 5.9e-13 77.4 55 67.3
BcaB04g21362 Brassica carinata HOM05D003334 ORTHO05D004076 7.7e-13 77.0 64 59.4
A01p40810 Brassica napus HOM05D003334 ORTHO05D004076 7.7e-13 77.0 60 60.0
BNapus_Darmor_BZH_scaffold_78p00900 Brassica napus HOM05D003334 ORTHO05D004076 7.7e-13 77.0 60 60.0
BraA01t04517Z Brassica rapa HOM05D003334 ORTHO05D004076 7.7e-13 77.0 60 60.0
CARHR078780 Cardamine hirsuta HOM05D003334 ORTHO05D004076 7.7e-13 77.0 52 67.3
BraA03t12541Z Brassica rapa HOM05D003334 ORTHO05D004076 1.0e-12 76.6 37 89.2
Sp6g11650 Schrenkiella parvula HOM05D003334 ORTHO05D004076 1.0e-12 76.6 37 86.5
QL01p002114 Quercus lobata HOM05D003334 ORTHO05D004076 1.7e-12 75.9 60 60.0
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.7e-12 75.9 37 86.5
A03p33670 Brassica napus HOM05D003334 ORTHO05D004076 2.9e-12 75.1 55 61.8
AUR62005286 Chenopodium quinoa HOM05D003334 ORTHO05D004076 2.9e-12 75.1 46 71.7
BcaB03g16657 Brassica carinata HOM05D003334 ORTHO05D004076 5.0e-12 74.3 72 55.6
Thhalv10003092m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 8.6e-12 73.6 38 81.6
EL10Ac4g09810 Beta vulgaris HOM05D003334 ORTHO05D004076 1.1e-11 73.2 41 70.7
BcaB06g25549 Brassica carinata HOM05D003334 ORTHO05D004076 1.1e-11 73.2 60 56.7
PRCOL_00004976 Prasinoderma coloniale HOM05D003334 ORTHO05D004076 1.1e-11 73.2 55 60.0
HPP92_011708 Vanilla planifolia HOM05D003334 ORTHO05D004076 1.1e-11 73.2 38 81.6
Mapoly0053s0020 Marchantia polymorpha HOM05D003334 ORTHO05D004076 1.5e-11 72.8 55 61.8
Hma1.2p1_1064F.1_g253620 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 1.9e-11 72.4 65 52.3
Ah.15g091810 Amaranthus hybridus HOM05D003334 ORTHO05D004076 2.5e-11 72.0 64 54.7
SMO143G0103 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 3.3e-11 71.6 38 76.3
SHI16564 Sapria himalayana HOM05D003334 ORTHO05D004076 4.2e-11 71.2 38 76.3
A07p01960 Brassica napus HOM05D003334 ORTHO05D004076 1.2e-10 69.7 58 53.4
BraA07t27995Z Brassica rapa HOM05D003334 ORTHO05D004076 1.2e-10 69.7 58 53.4
CARHR060040 Cardamine hirsuta HOM05D003334 ORTHO05D004076 2.1e-10 68.9 62 54.8
Cre12.g522350 Chlamydomonas reinhardtii HOM05D003334 ORTHO05D004076 2.8e-10 68.6 38 71.1
Oeu028126.2 Olea europaea HOM05D003334 ORTHO05D004076 2.8e-10 68.6 56 60.7
CBR_g37637 Chara braunii HOM05D003334 ORTHO05D004076 4.7e-10 67.8 38 73.7
C07p04090 Brassica napus HOM05D003334 ORTHO05D004076 6.1e-10 67.4 60 51.7
BolC7t40804H Brassica oleracea HOM05D003334 ORTHO05D004076 6.1e-10 67.4 39 79.5
Pp3c2_27540 Physcomitrium patens HOM05D003334 ORTHO05D004076 6.1e-10 67.4 41 73.2
Dinv11744 Davidia involucrata HOM05D003334 ORTHO05D022509 1.0e-09 66.6 55 58.2
FAN09G0153 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.8e-09 65.9 66 53.0
BcaB04g21381 Brassica carinata HOM05D003334 ORTHO05D004076 2.3e-09 65.5 69 55.1
BcaC09g48536 Brassica carinata HOM05D003334 ORTHO05D004076 4.0e-09 64.7 44 72.7
Dinv13219 Davidia involucrata HOM05D000386 ORTHO05D000406 4.0e-09 64.7 55 60.0
MCO14G308 Micromonas commoda HOM05D003334 ORTHO05D004076 4.0e-09 64.7 39 71.8
FvH4_5g27321 Fragaria vesca HOM05D003334 ORTHO05D022509 8.9e-09 63.5 40 62.5
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 8.9e-09 63.5 40 62.5
FAN13G3113 Fragaria x ananassa HOM05D003334 ORTHO05D022509 8.9e-09 63.5 40 62.5
FAN18G4190 Fragaria x ananassa HOM05D003334 ORTHO05D022509 8.9e-09 63.5 40 62.5
Lj4g0019738 Lotus japonicus HOM05D003334 ORTHO05D048463 2.6e-08 62.0 33 78.8
AagrBONN_evm.TU.Sc2ySwM_228.5148 Anthoceros agrestis HOM05D003334 ORTHO05D004076 9.8e-08 60.1 57 54.4
Atru.chr5.3183 Acer truncatum HOM05D003334 ORTHO05D004076 1.3e-07 59.7 38 65.8
BcaC09g47814 Brassica carinata HOM05D003334 ORTHO05D004076 1.7e-07 59.3 40 72.5
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 1.7e-07 59.3 40 72.5
BolC1t05722H Brassica oleracea HOM05D003334 ORTHO05D004076 1.7e-07 59.3 40 72.5
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.7e-07 59.3 40 72.5
SGA_v2.0_scaffold269G46297 Striga asiatica HOM05D003334 ORTHO05D004076 2.4e-06 55.5 39 61.5
FAN08G2131 Fragaria x ananassa HOM05D003334 ORTHO05D004076 3.1e-06 55.1 46 56.5


User provided reference genes

Program Settings