Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 0.0e+00 1168.7 604 100.0
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 7.2e-291 1003.4 603 87.4
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 5.6e-283 977.2 589 86.8
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 5.6e-267 924.1 600 82.5
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 3.4e-264 914.8 548 86.5
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 1.7e-231 806.2 615 70.4
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 6.4e-231 804.3 627 70.0
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 5.5e-230 801.2 627 69.7
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 7.1e-230 800.8 625 69.8
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.2e-229 800.0 604 71.4
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 1.0e-228 797.0 627 69.4
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 5.1e-228 794.7 617 70.0
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 8.7e-228 793.9 617 70.5
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.5e-227 793.1 613 69.8
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.7e-226 788.5 626 69.3
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 1.8e-225 786.2 613 69.2
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 1.8e-225 786.2 616 69.5
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 3.1e-225 785.4 613 69.5
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 9.0e-225 783.9 615 68.6
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.2e-224 783.5 615 69.4
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.1e-222 776.9 654 66.4
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 5.5e-222 774.6 637 67.8
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 3.5e-221 771.9 618 67.6
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 6.0e-221 771.2 628 67.0
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 1.3e-220 770.0 622 67.7
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 1.8e-220 769.6 616 68.0
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 6.7e-220 767.7 618 68.3
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.1e-219 766.9 613 67.5
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 2.4e-217 759.2 628 68.3
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 4.1e-217 758.4 615 67.6
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 1.9e-214 749.6 617 66.0
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 9.3e-214 747.3 619 66.2
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 2.7e-213 745.7 617 65.2
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 6.1e-213 744.6 618 65.7
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 7.9e-213 744.2 612 67.2
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.8e-212 743.0 627 66.3
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 3.0e-212 742.3 624 66.3
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 5.7e-211 738.0 616 65.9
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 3.7e-210 735.3 626 63.6
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 6.3e-210 734.6 613 66.4
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 6.9e-209 731.1 615 65.5
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 2.0e-208 729.6 613 65.4
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 5.9e-208 728.0 646 65.2
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 7.7e-208 727.6 616 64.1
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.0e-207 727.2 608 66.8
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 3.2e-206 722.2 610 65.6
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 2.7e-205 719.2 609 66.2
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 2.7e-205 719.2 618 65.4
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 6.1e-205 718.0 617 64.7
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 6.1e-205 718.0 657 61.6
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 3.0e-204 715.7 617 65.0
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 3.3e-203 712.2 626 62.8
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 7.4e-203 711.1 616 63.1
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 7.4e-203 711.1 617 63.7
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 7.4e-203 711.1 618 64.2
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 4.8e-202 708.4 611 64.8
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 8.2e-202 707.6 618 64.2
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 6.9e-201 704.5 630 61.6
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 9.1e-201 704.1 615 62.6
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 1.5e-200 703.4 610 65.7
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 1.3e-199 700.3 610 62.8
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-199 700.3 617 63.5
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 2.2e-199 699.5 625 63.8
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 1.1e-198 697.2 601 63.2
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 1.4e-198 696.8 609 62.9
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 3.2e-198 695.7 609 62.7
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 9.4e-198 694.1 618 62.6
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 9.4e-198 694.1 613 63.1
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 2.1e-197 693.0 552 68.3
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.4e-196 690.3 609 62.4
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.4e-196 690.3 618 63.3
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-196 690.3 616 62.8
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 2.3e-196 689.5 489 72.0
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 3.9e-196 688.7 610 63.6
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.0e-195 686.4 647 60.9
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 2.6e-195 686.0 611 62.7
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 4.4e-195 685.3 636 61.5
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 5.7e-195 684.9 622 61.1
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 9.7e-195 684.1 638 62.1
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 1.3e-194 683.7 632 61.2
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 2.0e-192 676.4 635 60.3
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 5.5e-190 668.3 604 60.6
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 6.1e-189 664.8 620 62.3
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 3.0e-188 662.5 614 60.4
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 5.2e-188 661.8 621 62.3
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 8.8e-188 661.0 570 64.7
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 3.5e-184 649.0 627 59.6
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 2.2e-183 646.4 622 59.6
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.9e-183 646.0 591 61.8
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 3.8e-183 645.6 625 60.2
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 5.5e-182 641.7 561 63.3
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 4.0e-180 635.6 621 59.1
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 5.7e-179 631.7 632 59.5
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 5.0e-175 618.6 531 65.2
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 9.5e-174 614.4 614 57.7
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 1.6e-173 613.6 556 61.5
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 1.2e-171 607.4 527 64.1
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.7e-170 603.6 610 56.7
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 2.8e-170 602.8 555 61.3
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 1.4e-169 600.5 625 56.5
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.4e-169 599.7 585 59.5
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 2.9e-167 592.8 616 56.7
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 9.2e-161 571.2 587 58.3
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.1e-157 560.1 381 75.6
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 6.4e-154 548.5 339 82.0
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 2.6e-147 526.6 515 57.7
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 3.7e-146 522.7 340 79.1
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 5.8e-139 498.8 319 79.0
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-137 493.4 608 49.3
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 7.8e-136 488.4 337 74.5
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.5e-134 483.4 621 51.4
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 2.8e-133 479.9 608 48.0
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.4e-131 473.0 503 55.9
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.3e-130 471.1 435 60.9
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 3.4e-123 446.4 516 52.7
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.3e-110 403.3 395 59.2
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 1.4e-108 397.9 657 39.9
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 1.0e-95 355.1 380 55.0
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.1e-94 351.7 375 57.6
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 5.3e-92 342.8 278 68.0
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.2e-89 332.4 322 60.9
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 9.4e-89 332.0 196 87.2
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 8.2e-85 318.9 374 50.8
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 7.0e-84 315.8 532 38.7
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 5.0e-82 309.7 320 56.9
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 2.1e-80 304.3 230 70.4
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 2.3e-79 300.8 682 35.8
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 6.3e-69 266.2 226 57.5
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.6e-64 250.4 242 58.3
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 8.0e-64 249.2 332 49.7
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 1.7e-58 231.5 270 52.6
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 1.2e-56 225.3 732 28.7
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 6.1e-56 223.0 274 51.5
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 1.4e-55 221.9 277 51.3
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 5.7e-54 216.5 260 51.9
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 3.7e-53 213.8 271 49.1
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.0e-50 203.4 255 51.0
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.5e-49 201.8 233 49.8
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 1.9e-49 201.4 267 47.9
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 6.1e-48 196.4 110 89.1
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 2.3e-47 194.5 119 79.0
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 4.0e-47 193.7 149 69.1
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 6.8e-47 193.0 271 46.9
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 1.2e-40 172.2 274 40.5
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.4e-39 168.7 110 76.4
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.1e-34 150.2 232 40.1
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 4.3e-33 147.1 75 100.0
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 7.3e-33 146.4 75 100.0
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 9.5e-33 146.0 196 46.4
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 4.7e-32 143.7 81 91.4
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.2e-29 134.8 321 32.7
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.4e-29 133.3 215 44.2
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.1e-28 132.5 211 46.4
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 1.1e-28 132.5 126 60.3
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.3e-26 124.8 151 52.3
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 3.9e-26 124.0 128 53.1
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 2.1e-24 118.2 354 33.1
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 3.1e-23 114.4 397 29.0
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 1.2e-22 112.5 176 44.3
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.0e-22 111.7 158 47.5
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 5.8e-22 110.2 155 42.6
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 1.9e-20 105.1 142 40.8
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 7.1e-20 103.2 266 29.7
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.1e-19 101.7 142 48.6
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 3.0e-18 97.8 117 53.0
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-17 95.5 77 62.3
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 3.3e-17 94.4 122 48.4
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 6.4e-13 80.1 119 45.4
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 3.1e-07 61.2 50 60.0
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 3.1e-07 61.2 38 89.5
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 9.0e-07 59.7 38 86.8
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 2.6e-06 58.2 73 46.6
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 5.8e-06 57.0 47 57.4


User provided reference genes

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