Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 3.8e-174 614.8 314 100.0
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 5.0e-126 454.9 315 75.6
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 9.4e-125 450.7 315 73.7
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 1.2e-124 450.3 314 73.9
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 7.5e-122 441.0 325 71.4
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 5.3e-120 434.9 306 72.5
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 2.6e-119 432.6 306 71.9
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 7.7e-119 431.0 306 71.2
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 7.7e-119 431.0 306 71.6
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 1.0e-118 430.6 313 70.9
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 1.0e-118 430.6 315 70.2
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 1.3e-118 430.3 306 70.6
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 3.8e-118 428.7 305 70.8
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 5.0e-118 428.3 305 70.8
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 6.5e-118 427.9 305 71.5
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 6.5e-118 427.9 306 70.9
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 6.5e-118 427.9 305 72.1
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 1.1e-117 427.2 305 70.8
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 1.5e-117 426.8 305 70.8
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 2.5e-117 426.0 306 71.2
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 2.5e-117 426.0 305 71.5
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 3.2e-117 425.6 304 72.0
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 4.2e-117 425.2 313 70.0
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 5.5e-117 424.9 309 70.9
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 7.2e-117 424.5 305 70.5
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 9.4e-117 424.1 305 70.5
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 1.2e-116 423.7 305 70.2
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 2.7e-116 422.5 305 70.2
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 3.6e-116 422.2 306 70.6
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 4.7e-116 421.8 301 71.8
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 4.7e-116 421.8 306 69.3
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 6.1e-116 421.4 306 70.6
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 6.1e-116 421.4 229 94.8
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 6.1e-116 421.4 316 68.4
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 8.0e-116 421.0 303 71.0
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 8.0e-116 421.0 313 69.3
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 8.0e-116 421.0 305 70.2
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 1.0e-115 420.6 306 69.3
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 1.4e-115 420.2 328 68.0
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 1.8e-115 419.9 306 70.3
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 4.0e-115 418.7 313 69.3
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 6.8e-115 417.9 303 71.3
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 6.8e-115 417.9 303 71.3
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 1.2e-114 417.2 313 68.7
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 1.5e-114 416.8 306 69.0
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 2.6e-114 416.0 305 69.2
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 3.4e-114 415.6 305 69.2
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 3.4e-114 415.6 305 68.5
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 3.4e-114 415.6 303 70.0
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 3.4e-114 415.6 303 70.3
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 3.4e-114 415.6 305 69.5
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 7.5e-114 414.5 302 70.9
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 7.5e-114 414.5 307 68.7
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 9.8e-114 414.1 305 68.9
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 9.8e-114 414.1 304 69.4
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 1.3e-113 413.7 305 68.9
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 1.3e-113 413.7 307 68.7
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 1.7e-113 413.3 304 69.1
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 2.8e-113 412.5 312 67.3
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 3.7e-113 412.1 303 70.3
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 1.4e-112 410.2 306 69.0
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 5.4e-112 408.3 303 68.3
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 1.2e-111 407.1 303 69.0
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 4.5e-111 405.2 305 68.9
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 1.0e-110 404.1 308 67.9
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 2.2e-110 402.9 314 65.3
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 2.9e-110 402.5 305 68.2
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 1.6e-108 396.7 306 67.6
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 2.7e-108 396.0 337 63.8
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 4.7e-108 395.2 305 67.5
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 3.0e-107 392.5 365 60.0
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 8.8e-107 391.0 325 65.2
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 2.8e-105 386.0 350 60.3
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 1.2e-103 380.6 340 62.9
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 1.3e-102 377.1 265 72.1
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 1.7e-102 376.7 305 65.6
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 1.1e-101 374.0 303 62.7
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 1.6e-100 370.2 292 65.4
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 3.0e-99 365.9 347 57.1
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 6.8e-99 364.8 259 70.7
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 1.2e-98 364.0 310 64.2
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.6e-98 362.8 313 62.3
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 4.4e-98 362.1 303 64.0
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 2.9e-97 359.4 294 63.3
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 3.7e-97 359.0 321 60.1
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.1e-96 357.5 311 63.7
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.1e-96 357.5 306 59.2
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.1e-93 347.4 303 58.4
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 9.5e-93 344.4 416 49.3
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 1.6e-92 343.6 496 44.0
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 2.8e-92 342.8 226 75.7
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 6.2e-92 341.7 228 72.8
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 1.4e-91 340.5 307 61.9
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 1.8e-91 340.1 263 66.9
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 4.0e-91 339.0 305 56.7
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 8.3e-89 331.3 260 66.2
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 1.4e-88 330.5 303 60.4
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 1.9e-88 330.1 295 56.6
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 2.7e-87 326.2 250 66.0
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 6.6e-86 321.6 305 57.0
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 2.1e-84 316.6 262 60.7
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 1.3e-78 297.4 206 70.4
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 5.1e-78 295.4 250 62.8
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 7.3e-77 291.6 216 69.9
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 1.1e-75 287.7 251 62.5
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 1.7e-73 280.4 269 54.3
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 5.8e-66 255.4 304 48.7
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 7.1e-64 248.4 264 53.0
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 4.8e-60 235.7 300 45.7
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 5.8e-58 228.8 153 71.9
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 7.6e-58 228.4 190 64.2
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 9.9e-58 228.0 195 64.1
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 4.3e-53 212.6 183 63.9
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 7.4e-53 211.8 157 67.5
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 1.9e-48 197.2 120 78.3
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 7.4e-45 185.3 120 73.3
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 2.8e-44 183.3 155 63.2
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 4.0e-43 179.5 487 31.0
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 5.8e-42 175.6 113 73.5
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 1.5e-37 161.0 139 64.0
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 2.9e-33 146.7 229 43.2
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 4.2e-32 142.9 231 34.6
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 5.3e-27 125.9 301 28.9
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 5.5e-24 115.9 315 27.9
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 3.9e-22 109.8 95 61.1
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 1.7e-20 104.4 69 69.6
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 2.2e-20 104.0 66 74.2
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 1.2e-18 98.2 68 67.6
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 7.7e-18 95.5 58 77.6
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 5.0e-17 92.8 57 75.4
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 2.5e-16 90.5 56 75.0
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 3.6e-15 86.7 56 73.2
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 3.9e-14 83.2 50 78.0
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 2.2e-09 67.4 43 72.1
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 9.4e-08 62.0 102 35.3
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 9.4e-08 62.0 116 32.8
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 2.1e-07 60.8 102 36.3
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 2.7e-07 60.5 105 36.2
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 2.7e-07 60.5 102 34.3
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 3.6e-07 60.1 47 57.4
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 4.7e-07 59.7 133 31.6
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 6.1e-07 59.3 102 34.3
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 8.0e-07 58.9 102 33.3
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 8.0e-07 58.9 109 31.2
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 1.0e-06 58.5 102 36.3
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 1.0e-06 58.5 102 36.3
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 1.0e-06 58.5 129 30.2
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 1.4e-06 58.2 111 32.4
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 1.4e-06 58.2 102 35.3
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.4e-06 58.2 102 32.4
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 1.4e-06 58.2 102 33.3
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 1.8e-06 57.8 102 32.4
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 2.3e-06 57.4 102 33.3
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 2.3e-06 57.4 102 35.3
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 2.3e-06 57.4 109 32.1
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 2.3e-06 57.4 102 33.3
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 2.3e-06 57.4 129 30.2
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 2.3e-06 57.4 102 32.4
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 3.0e-06 57.0 102 32.4
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 3.0e-06 57.0 102 32.4
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 4.0e-06 56.6 102 31.4
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 4.0e-06 56.6 109 31.2
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 4.0e-06 56.6 109 31.2
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 4.0e-06 56.6 109 31.2
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 4.0e-06 56.6 109 32.1
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 4.0e-06 56.6 102 32.4
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 5.2e-06 56.2 102 31.4
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 6.7e-06 55.8 102 35.3
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 6.7e-06 55.8 109 31.2
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 6.7e-06 55.8 109 32.1
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 6.7e-06 55.8 102 35.3


User provided reference genes

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