Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 1.3e-273 946.0 552 100.0
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 3.9e-251 871.3 554 93.3
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 3.1e-248 861.7 554 92.4
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 7.4e-242 840.5 521 94.0
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 1.0e-238 830.1 516 88.0
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 2.4e-208 729.2 516 76.4
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 3.4e-202 708.8 554 71.1
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 1.4e-200 703.4 534 76.0
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 5.4e-200 701.4 529 73.0
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 2.7e-199 699.1 553 71.1
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.7e-198 696.4 554 74.9
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 7.3e-197 691.0 554 72.7
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 9.5e-197 690.6 554 72.7
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 2.8e-196 689.1 554 72.7
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 2.8e-196 689.1 554 73.3
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.0e-195 687.2 554 72.4
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.4e-195 686.8 554 69.3
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 3.1e-195 685.6 554 69.1
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 3.4e-194 682.2 554 73.6
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 1.7e-193 679.9 530 70.9
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 2.9e-193 679.1 526 70.0
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 2.9e-193 679.1 515 71.8
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.7e-193 678.7 556 73.2
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 6.4e-193 677.9 554 72.2
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 1.9e-192 676.4 555 73.3
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 5.4e-192 674.9 559 68.7
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 5.4e-192 674.9 515 70.1
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.6e-191 673.3 552 69.0
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.0e-191 672.9 506 73.3
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 2.7e-191 672.5 552 68.1
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 3.5e-191 672.2 513 76.0
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.3e-190 670.2 553 72.0
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 2.3e-190 669.5 555 68.8
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 6.6e-190 667.9 520 72.9
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 6.6e-190 667.9 554 68.8
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 8.6e-190 667.5 555 68.5
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.9e-189 666.4 554 69.0
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 1.9e-189 666.4 554 72.4
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.9e-189 666.4 556 68.2
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.6e-189 664.8 556 68.9
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 2.8e-188 662.5 513 70.2
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.1e-187 660.6 556 71.6
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.4e-187 660.2 521 69.3
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.8e-187 659.8 515 70.5
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 3.1e-187 659.1 553 71.1
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 6.8e-187 657.9 556 70.9
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.2e-186 657.1 521 69.1
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.4e-186 655.6 556 70.7
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 3.4e-186 655.6 556 71.8
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 3.4e-186 655.6 556 71.8
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 3.4e-186 655.6 556 67.4
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 4.4e-186 655.2 567 67.9
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 7.5e-186 654.4 554 71.3
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.3e-185 653.7 556 70.7
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.7e-185 653.3 556 70.5
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 2.2e-185 652.9 554 71.5
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 3.7e-185 652.1 545 67.7
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 1.1e-184 650.6 554 70.2
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.1e-184 650.6 556 70.3
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 1.1e-184 650.6 525 69.0
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.4e-184 650.2 552 67.0
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 3.2e-184 649.0 554 70.2
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.4e-184 648.3 536 68.1
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.2e-183 647.1 554 69.9
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 2.1e-183 646.4 556 67.1
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 3.0e-182 642.5 553 65.6
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 1.5e-181 640.2 506 69.2
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 1.5e-181 640.2 554 69.9
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 7.3e-181 637.9 550 66.7
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 1.4e-179 633.6 552 65.6
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 3.1e-179 632.5 637 62.6
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 4.0e-179 632.1 556 64.6
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 6.8e-179 631.3 557 64.8
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.7e-177 626.7 553 67.6
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 6.4e-177 624.8 553 63.8
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 3.2e-176 622.5 560 65.4
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 4.1e-176 622.1 508 71.7
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 3.5e-175 619.0 553 63.7
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 3.5e-175 619.0 553 63.7
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 3.5e-175 619.0 553 63.7
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 4.6e-175 618.6 552 63.9
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.7e-174 616.7 556 63.1
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 3.0e-174 615.9 555 63.4
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.9e-174 615.5 554 63.2
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 6.6e-174 614.8 554 63.5
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.1e-173 614.0 541 64.5
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.9e-173 613.2 514 66.3
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 4.7e-172 608.6 554 62.6
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 4.0e-171 605.5 560 65.4
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 4.4e-170 602.1 556 63.5
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 4.4e-170 602.1 483 68.3
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 7.6e-170 601.3 554 64.8
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 1.3e-169 600.5 556 62.1
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.8e-169 599.0 556 62.8
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 5.4e-168 595.1 519 69.0
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 1.6e-167 593.6 519 63.4
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.3e-166 589.7 549 61.4
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 3.0e-166 589.3 518 62.5
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 3.0e-166 589.3 518 66.8
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.5e-165 587.0 561 63.3
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 1.1e-163 580.9 559 65.1
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 1.1e-163 580.9 442 69.5
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 1.4e-163 580.5 549 61.9
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 2.4e-163 579.7 523 62.7
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.7e-161 573.5 561 66.0
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 3.8e-161 572.4 552 59.2
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 4.2e-160 568.9 548 63.7
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 1.2e-159 567.4 555 59.5
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 1.6e-159 567.0 557 60.7
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 2.1e-156 556.6 553 64.2
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 2.4e-155 553.1 462 72.3
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.4e-152 543.1 406 71.2
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 3.2e-152 542.7 455 72.3
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 7.9e-151 538.1 440 67.7
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 8.7e-142 508.1 516 56.2
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.4e-139 500.7 543 56.0
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 6.9e-139 498.4 559 55.1
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 7.9e-135 485.0 558 52.9
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 1.0e-134 484.6 547 53.7
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.1e-134 482.3 458 63.3
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 1.3e-129 467.6 649 48.2
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 1.9e-128 463.8 499 55.5
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 8.8e-126 454.9 501 52.7
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.0e-121 441.4 361 66.8
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 3.0e-118 429.9 327 73.1
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 3.0e-110 403.3 526 46.4
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 5.5e-104 382.5 544 43.4
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 7.2e-104 382.1 338 69.5
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 6.8e-102 375.6 533 44.7
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 5.7e-101 372.5 332 59.3
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 5.9e-90 335.9 566 41.5
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.7e-84 316.6 354 58.5
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 3.1e-78 297.0 525 39.0
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 3.7e-76 290.0 266 57.9
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.0e-65 253.8 220 60.9
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 2.4e-59 234.2 250 57.2
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 1.3e-57 228.4 325 46.2
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 2.5e-56 224.2 179 70.9
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 2.4e-51 207.6 155 69.7
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 2.7e-50 204.1 155 69.7
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 1.0e-49 202.2 534 32.4
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.0e-49 202.2 171 69.6
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 5.1e-49 199.9 188 58.0
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.5e-45 188.3 151 68.9
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.2e-42 178.7 128 71.9
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 9.0e-38 162.5 641 29.3
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 9.9e-37 159.1 580 29.5
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.2e-34 152.1 136 66.2
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 6.2e-31 139.8 91 80.2
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 5.3e-30 136.7 150 54.7
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.6e-29 134.4 92 75.0
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 3.4e-29 134.0 92 75.0
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 3.4e-29 134.0 92 75.0
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 3.4e-29 134.0 92 75.0
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.9e-27 128.3 88 75.0
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 4.2e-27 127.1 92 72.8
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 2.7e-26 124.4 92 71.7
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 5.7e-24 116.7 90 62.2
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.8e-23 113.6 100 61.0
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.2e-19 100.9 91 59.3
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 9.3e-19 99.4 103 62.1
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 9.3e-19 99.4 155 41.9
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 7.4e-16 89.7 77 63.6
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 9.7e-16 89.4 118 47.5
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 1.2e-13 82.4 82 50.0
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 2.0e-13 81.6 76 57.9
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.3e-12 79.0 58 67.2
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.2e-12 78.2 59 69.5
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 5.1e-09 67.0 59 61.0
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 2.0e-08 65.1 48 72.9


User provided reference genes

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