Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 2173.7 1131 100.0
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1957.6 1132 91.1
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1891.7 1132 88.7
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1855.5 1132 87.4
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1563.1 1161 72.8
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1546.6 1146 71.7
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1536.9 1134 72.1
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1535.4 1139 72.7
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1533.5 1159 70.8
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1525.8 1148 71.3
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1519.6 1141 71.5
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1518.1 1161 70.3
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1518.1 1179 69.6
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1514.2 1179 69.6
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1504.2 1155 70.1
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1502.6 1138 71.7
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1497.3 1179 69.4
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1492.2 1154 70.7
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1491.9 1167 69.9
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1488.8 1160 69.7
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1486.5 1152 69.6
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1480.3 1145 69.7
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1480.3 1179 69.1
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1480.3 1141 70.4
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1475.7 1166 69.0
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1474.1 1140 69.3
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1472.6 1166 68.9
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1472.6 1140 69.3
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1472.6 1152 69.4
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1469.5 1178 68.5
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1465.3 1140 69.6
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1462.6 1140 69.6
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1447.2 1150 68.1
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1444.5 1177 67.5
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1443.3 1142 67.9
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1437.6 1165 68.2
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1436.0 1147 67.8
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1434.9 1153 67.0
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1431.4 1152 68.1
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1430.6 1161 67.5
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1422.5 1165 67.0
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1419.1 1138 68.0
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1418.7 1150 67.5
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1417.1 1153 67.5
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1416.7 1136 68.0
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1416.4 1135 68.4
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1412.5 1158 67.0
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1409.8 1145 67.5
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1409.4 1135 68.3
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1407.9 1150 67.3
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1407.5 1153 66.3
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1407.5 1153 66.3
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1407.5 1151 67.2
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1406.7 1156 66.0
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1404.8 1152 66.3
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1401.3 1198 65.5
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1399.4 1135 67.8
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1398.6 1165 66.6
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1397.9 1154 66.6
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1396.3 1152 66.7
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1395.2 1154 66.6
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1395.2 1156 66.3
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1392.5 1156 66.0
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1390.9 1154 66.0
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1389.0 1156 66.0
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1388.6 1142 66.2
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1388.2 1149 66.4
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1388.2 1164 66.6
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1387.9 1172 65.0
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1387.9 1157 65.8
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1384.8 1140 67.0
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1383.6 1138 66.7
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1377.8 1143 66.3
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1377.8 1131 67.6
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1373.2 1129 66.7
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1357.8 1147 65.3
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1351.7 1152 64.1
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1348.2 1152 65.2
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1344.7 1147 64.3
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1342.0 1156 65.0
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1332.8 1149 64.8
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1330.1 1160 64.4
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1312.4 1148 64.0
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1302.7 1139 63.1
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1283.5 1215 59.1
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1276.5 1171 60.6
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1203.3 935 69.6
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1193.3 889 72.1
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1111.7 909 68.2
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1103.2 1240 51.5
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1099.3 1034 60.3
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1079.3 1220 51.6
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 8.4e-309 1063.9 1210 51.0
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 6.7e-306 1054.3 740 73.9
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.1e-287 991.9 1158 50.6
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.3e-260 902.1 738 66.9
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 1.9e-247 860.1 1413 40.1
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 5.6e-236 822.0 589 74.4
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 2.0e-233 813.5 590 73.2
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 2.3e-221 773.5 545 74.5
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 3.3e-220 769.6 538 75.5
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.9e-212 743.8 626 65.0
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 2.4e-210 736.9 535 73.8
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 5.7e-196 689.1 627 60.9
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 2.4e-186 657.1 598 61.9
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 3.2e-175 620.2 1162 37.8
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 3.3e-172 610.1 573 60.2
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 4.1e-162 576.6 556 59.7
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 9.8e-156 555.4 551 58.1
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 9.8e-140 502.3 460 62.6
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 2.2e-139 501.1 390 68.2
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 8.0e-134 482.6 541 54.2
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 3.2e-122 444.1 316 73.1
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.9e-115 421.0 325 70.2
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 6.4e-115 419.9 774 35.8
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.8e-109 401.7 372 61.6
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 6.4e-107 393.3 381 58.8
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 4.6e-105 387.1 482 50.0
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 3.0e-104 384.4 537 45.4
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 4.5e-92 344.0 231 77.9
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 3.8e-91 340.9 1180 28.4
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.7e-89 334.7 358 52.8
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 9.3e-82 309.7 261 57.9
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 4.3e-79 300.8 388 52.1
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 7.9e-73 280.0 252 61.1
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 2.4e-69 268.5 221 67.0
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 2.5e-66 258.5 357 47.3
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 1.6e-65 255.8 240 58.3
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 6.1e-65 253.8 149 87.9
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.0e-64 253.1 147 84.4
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.4e-64 252.7 166 74.7
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 1.7e-62 245.7 357 45.4
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 2.2e-62 245.4 357 45.1
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 3.7e-62 244.6 357 45.4
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.9e-50 205.7 195 57.4
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 3.2e-50 204.9 106 95.3
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-48 199.5 113 88.5
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 3.3e-47 194.9 111 88.3
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 7.5e-47 193.7 113 86.7
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-45 189.5 113 85.0
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 1.8e-45 189.1 113 85.0
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 7.7e-44 183.7 591 31.5
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 2.5e-42 178.7 109 84.4
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 2.1e-41 175.6 189 56.1
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 2.7e-41 175.3 106 84.9
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 3.7e-38 164.9 99 82.8
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.3e-38 164.1 89 89.9
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 2.0e-36 159.1 97 81.4
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 2.1e-33 149.1 82 92.7
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 7.0e-29 134.0 120 58.3
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 7.8e-28 130.6 150 49.3
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 4.0e-24 118.2 72 79.2
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 4.4e-23 114.8 75 80.0
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 1.3e-22 113.2 75 78.7
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 1.1e-21 110.2 73 74.0
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 1.9e-21 109.4 159 47.2
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 1.7e-19 102.8 91 62.6
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.7e-19 102.8 73 68.5


User provided reference genes

Program Settings