Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020559 Sechium edule HOM05D002653 ORTHO05D002623 8.2e-79 297.0 148 100.0
MELO3C010033.2 Cucumis melo HOM05D002653 ORTHO05D002623 4.4e-48 194.9 111 85.6
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 5.6e-27 124.8 115 56.5
QL04p064992 Quercus lobata HOM05D002653 ORTHO05D002623 4.7e-26 121.7 116 56.0
CiPaw.06G000300 Carya illinoinensis HOM05D002653 ORTHO05D002623 6.2e-26 121.3 116 52.6
CSS0026519 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 2.6e-24 115.9 120 53.3
CSS0038262 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 2.6e-24 115.9 120 53.3
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 2.2e-23 112.8 114 50.0
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 2.4e-22 109.4 120 49.2
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 3.2e-22 109.0 117 47.0
RcHm_v2.0_Chr2g0148301 Rosa chinensis HOM05D002653 ORTHO05D002623 7.8e-21 104.4 121 47.1
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 1.0e-20 104.0 113 46.9
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 2.3e-20 102.8 129 43.4
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 3.9e-20 102.1 120 48.3
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 5.1e-20 101.7 118 45.8
vmacro03485 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 6.6e-20 101.3 113 47.8
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.5e-19 100.1 140 40.7
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 1.9e-19 99.8 119 45.4
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 2.5e-19 99.4 140 40.7
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 2.5e-19 99.4 140 40.7
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 5.6e-19 98.2 118 44.9
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 5.6e-19 98.2 118 44.9
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 7.3e-19 97.8 140 40.0
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.2e-18 97.1 114 45.6
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 1.2e-18 97.1 132 44.7
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 1.6e-18 96.7 116 48.3
TAR624G0800 Trochodendron aralioides HOM05D002653 ORTHO05D002623 2.1e-18 96.3 67 64.2
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 2.8e-18 95.9 132 43.9
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 2.8e-18 95.9 119 47.9
Hma1.2p1_1074F.1_g254380 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 3.6e-18 95.5 111 45.0
Oeu013190.1 Olea europaea HOM05D002653 ORTHO05D002623 3.6e-18 95.5 107 43.9
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 4.7e-18 95.1 115 47.0
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 8.1e-18 94.4 52 84.6
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 1.4e-17 93.6 144 36.8
Phvul.002G234304 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 1.4e-17 93.6 116 47.4
Solyc11g045160.3 Solanum lycopersicum HOM05D002653 ORTHO05D002623 1.8e-17 93.2 136 39.7
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 1.8e-17 93.2 136 39.7
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 3.1e-17 92.4 126 41.3
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 4.0e-17 92.0 118 43.2
Phvul.002G234312 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 8.9e-17 90.9 116 46.6
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 1.2e-16 90.5 109 45.9
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 1.2e-16 90.5 133 41.4
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 2.6e-16 89.4 116 41.4
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 2.6e-16 89.4 118 42.4
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 3.4e-16 89.0 109 42.2
Migut.L00787 Erythranthe guttata HOM05D002653 ORTHO05D002623 3.4e-16 89.0 114 42.1
Migut.L00840 Erythranthe guttata HOM05D002653 ORTHO05D002623 3.4e-16 89.0 114 42.1
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 4.4e-16 88.6 112 44.6
Atru.chr8.1040 Acer truncatum HOM05D002653 ORTHO05D002623 5.8e-16 88.2 125 44.0
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 5.8e-16 88.2 115 44.3
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 7.5e-16 87.8 112 45.5
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 9.9e-16 87.4 133 39.1
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 1.3e-15 87.0 135 37.8
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 1.3e-15 87.0 124 41.1
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 1.3e-15 87.0 113 44.2
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 1.7e-15 86.7 115 47.0
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 2.2e-15 86.3 117 44.4
Gohir.D04G020301 Gossypium hirsutum HOM05D002653 ORTHO05D002623 3.7e-15 85.5 114 44.7
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 3.7e-15 85.5 114 44.7
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 3.7e-15 85.5 117 41.9
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 4.9e-15 85.1 116 39.7
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 4.9e-15 85.1 133 38.3
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 4.9e-15 85.1 133 38.3
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 4.9e-15 85.1 116 39.7
COL.COLO4_33574 Corchorus olitorius HOM05D002653 ORTHO05D002623 4.9e-15 85.1 115 44.3
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 4.9e-15 85.1 115 40.0
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 4.9e-15 85.1 116 42.2
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 8.3e-15 84.3 114 44.7
PSO782G1285 Papaver somniferum HOM05D002653 ORTHO05D002623 1.1e-14 84.0 115 40.0
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 2.4e-14 82.8 133 39.8
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 3.2e-14 82.4 114 41.2
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 4.1e-14 82.0 128 37.5
unitig_8.g3108 Utricularia gibba HOM05D002653 ORTHO05D002623 5.4e-14 81.6 112 37.5
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 7.1e-14 81.3 133 39.1
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 9.2e-14 80.9 133 36.1
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 1.2e-13 80.5 144 38.2
CDE12G0934 Ceratophyllum demersum HOM05D002653 ORTHO05D002623 1.6e-13 80.1 105 41.9
AUR62026805 Chenopodium quinoa HOM05D002653 ORTHO05D002623 2.1e-13 79.7 118 41.5
Zm00001eb260910 Zea mays HOM05D002653 ORTHO05D002623 6.0e-13 78.2 107 39.3
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 3.0e-12 75.9 132 32.6
Ca_14758_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.1e-11 73.9 72 50.0
Os08g0116700 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 1.5e-11 73.6 113 35.4
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 1.2e-10 70.5 61 55.7
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 1.2e-10 70.5 61 55.7
GSVIVG01019369001 Vitis vinifera HOM05D002653 ORTHO05D002623 2.8e-10 69.3 50 66.0
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 4.7e-10 68.6 110 35.5
Lsat_1_v5_gn_7_38641 Lactuca sativa HOM05D002653 ORTHO05D002623 4.0e-09 65.5 66 53.0
Cc11_g00300 Coffea canephora HOM05D002653 ORTHO05D002623 1.2e-08 63.9 51 58.8
VMungo0251G2657 Vigna mungo HOM05D002653 ORTHO05D002623 1.2e-08 63.9 54 57.4
Lsat_1_v5_gn_4_86300 Lactuca sativa HOM05D002653 ORTHO05D002623 1.3e-07 60.5 52 57.7
Ciclev10013786m.g Citrus clementina HOM05D002653 ORTHO05D002623 4.9e-07 58.5 50 56.0
SEGI_37635 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 6.4e-07 58.2 50 48.0
HPP92_001360 Vanilla planifolia HOM05D002653 ORTHO05D002623 6.4e-07 58.2 67 44.8
Psat6g120600 Pisum sativum HOM05D001580 ORTHO05D002623 3.2e-06 55.8 45 55.6
Peaxi162Scf00126g00051 Petunia axillaris HOM05D002653 ORTHO05D002623 4.2e-06 55.5 50 46.0
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 9.2e-06 54.3 136 25.7


User provided reference genes

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