Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 0.0e+00 1351.7 1055 100.0
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 1.0e-255 887.5 1127 65.7
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 2.2e-242 843.2 931 69.0
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 3.9e-239 832.4 933 67.3
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 1.9e-238 830.1 1047 66.6
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 1.9e-198 697.2 553 76.5
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 5.6e-198 695.7 560 73.6
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 7.4e-198 695.3 553 75.0
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 3.8e-194 682.9 553 72.5
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 1.1e-193 681.4 553 77.4
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 1.4e-193 681.0 560 75.2
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 2.7e-192 676.8 554 73.1
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 2.5e-185 653.7 551 72.6
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 7.1e-185 652.1 495 82.2
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.2e-184 651.4 553 70.3
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 1.6e-184 651.0 577 69.8
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.7e-184 650.2 558 71.7
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.3e-183 647.9 583 68.3
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.8e-183 647.5 550 71.1
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 1.3e-181 641.3 556 73.6
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 2.8e-181 640.2 493 75.1
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 6.3e-181 639.0 597 72.0
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.1e-180 638.3 534 70.4
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 1.8e-180 637.5 553 70.2
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 4.1e-180 636.3 493 74.8
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 9.0e-180 635.2 571 67.3
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 1.2e-179 634.8 554 70.9
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 5.9e-179 632.5 553 69.1
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 7.7e-179 632.1 558 70.1
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.3e-178 631.3 597 71.4
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.2e-178 630.6 571 67.1
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 5.0e-178 629.4 553 70.3
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 1.4e-177 627.9 554 69.9
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 1.9e-177 627.5 558 66.3
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 3.2e-177 626.7 562 69.8
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 5.5e-177 625.9 506 74.3
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 5.5e-177 625.9 599 70.5
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 7.2e-177 625.5 576 68.4
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 7.9e-176 622.1 552 73.0
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 5.1e-175 619.4 551 69.5
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 5.7e-174 615.9 556 68.5
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 5.7e-174 615.9 560 72.9
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 7.4e-174 615.5 498 75.9
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 1.3e-173 614.8 551 66.6
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 2.2e-173 614.0 577 67.1
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 3.7e-173 613.2 546 66.3
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 6.3e-173 612.5 569 70.5
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 5.3e-172 609.4 576 67.0
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 6.9e-172 609.0 560 66.1
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 1.2e-171 608.2 573 64.0
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 1.5e-171 607.8 549 67.2
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 2.0e-171 607.4 505 71.9
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.4e-171 606.7 572 65.7
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 5.9e-171 605.9 560 66.6
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.0e-170 605.1 553 66.5
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.1e-169 601.7 555 71.0
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.1e-169 601.7 542 67.2
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 2.5e-169 600.5 556 66.0
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 2.5e-169 600.5 555 70.8
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.5e-169 600.5 555 70.8
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.2e-169 599.7 592 64.0
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 5.5e-169 599.4 696 56.5
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 7.2e-169 599.0 555 70.8
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 2.1e-168 597.4 557 62.5
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 1.0e-167 595.1 572 65.4
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.4e-167 594.7 554 67.7
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 5.1e-167 592.8 529 70.9
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 8.8e-167 592.0 577 65.7
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 1.5e-166 591.3 566 65.0
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 2.0e-166 590.9 556 66.7
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.4e-164 584.7 552 62.7
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 2.4e-164 583.9 569 64.7
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.4e-164 583.9 579 65.1
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 2.4e-164 583.9 546 69.4
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 3.1e-164 583.6 549 65.6
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 5.3e-164 582.8 544 66.5
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 9.1e-164 582.0 529 65.8
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 1.2e-163 581.6 564 65.2
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 1.0e-162 578.6 556 66.9
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.3e-162 578.2 551 67.9
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 6.5e-162 575.9 523 66.9
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 3.6e-160 570.1 548 65.3
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 1.0e-159 568.5 548 65.3
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 1.8e-159 567.8 528 62.9
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 1.8e-159 567.8 528 62.7
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 3.0e-159 567.0 568 68.7
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 8.8e-159 565.5 537 61.8
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 8.8e-159 565.5 537 61.8
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 2.6e-158 563.9 537 61.6
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 3.8e-154 550.1 559 63.9
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 6.5e-154 549.3 501 66.3
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 6.5e-154 549.3 710 55.5
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 2.5e-153 547.4 510 65.1
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 7.2e-153 545.8 560 60.5
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.4e-151 541.6 501 65.5
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 9.8e-150 535.4 563 65.7
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 4.1e-148 530.0 563 65.4
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.7e-141 508.1 581 59.9
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 3.3e-137 493.8 554 59.9
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 1.1e-132 478.8 476 64.3
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 4.3e-121 440.3 383 73.1
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 1.3e-117 428.7 563 58.3
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 1.4e-111 408.7 378 75.4
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 1.2e-110 405.6 546 56.4
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.5e-110 405.2 588 53.1
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.3e-106 391.3 284 69.0
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 6.4e-101 373.2 289 67.5
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.9e-85 321.2 205 74.6
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 3.5e-83 314.3 539 47.1
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.0e-82 312.8 544 47.1
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 4.1e-71 274.2 515 48.7
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 7.2e-68 263.5 514 47.7
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 3.9e-66 257.7 497 42.9
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 8.7e-66 256.5 177 74.6
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 2.8e-64 251.5 338 53.6
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.8e-63 248.8 226 73.9
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 1.1e-60 239.6 278 60.1
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 1.2e-59 236.1 233 53.2
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 4.6e-59 234.2 287 58.5
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.2e-56 225.3 224 71.0
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 1.0e-53 216.5 178 66.9
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 5.0e-53 214.2 210 64.8
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 2.4e-23 115.5 69 79.7
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 3.8e-21 108.2 58 87.9
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 3.0e-18 98.6 65 70.8
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 5.2e-18 97.8 141 47.5
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 1.2e-17 96.7 106 49.1
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 1.1e-15 90.1 227 31.3
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 2.4e-15 89.0 421 26.4
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 7.0e-15 87.4 102 50.0
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 3.5e-14 85.1 77 81.8
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 2.3e-13 82.4 188 40.4
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 6.6e-13 80.9 98 48.0
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 1.5e-12 79.7 102 48.0
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 4.3e-12 78.2 93 59.1
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 4.4e-09 68.2 137 54.7
Mapoly0001s0473 Marchantia polymorpha HOM05D042108 ORTHO05D048733 4.4e-09 68.2 133 57.9
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 7.5e-09 67.4 155 38.1
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 5.4e-07 61.2 188 37.8
Phvul.009G046200 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 6.0e-06 57.8 89 40.4
A01p24780 Brassica napus HOM05D001023 ORTHO05D000912 7.8e-06 57.4 86 38.4


User provided reference genes

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