Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 0.0e+00 1326.2 643 100.0
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 0.0e+00 1136.3 651 86.0
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 0.0e+00 1136.3 679 83.5
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 0.0e+00 1113.6 650 82.3
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 0.0e+00 1092.8 648 80.7
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 0.0e+00 1092.8 645 81.4
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 0.0e+00 1091.3 651 80.2
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 0.0e+00 1089.3 647 80.7
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 0.0e+00 1089.3 648 80.4
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 0.0e+00 1083.2 645 80.5
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 0.0e+00 1082.8 645 80.6
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 0.0e+00 1082.4 651 79.6
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 0.0e+00 1081.2 652 79.9
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 0.0e+00 1080.1 652 79.6
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 0.0e+00 1080.1 646 78.9
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 0.0e+00 1079.7 651 79.6
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 0.0e+00 1077.8 652 78.8
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 0.0e+00 1077.4 651 79.1
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 4.4e-312 1074.3 652 78.7
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 4.4e-312 1073.5 648 79.3
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 4.4e-312 1073.5 652 78.5
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 8.8e-312 1073.2 651 78.0
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 8.8e-312 1072.8 652 79.3
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 1.8e-311 1072.0 652 78.8
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 1.3e-309 1065.8 651 78.6
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 4.8e-309 1063.9 651 77.0
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 8.2e-309 1063.1 651 80.0
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.1e-308 1062.8 652 78.4
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 1.1e-308 1062.8 657 76.9
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 5.3e-308 1060.4 652 77.5
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 1.5e-307 1058.9 654 78.0
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 3.4e-307 1057.7 655 77.7
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 5.9e-307 1057.0 655 77.4
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 3.8e-306 1054.3 652 77.0
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 5.0e-306 1053.9 656 77.4
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 6.5e-306 1053.5 648 78.1
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.9e-305 1052.0 660 77.1
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 4.2e-305 1050.8 657 77.0
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 4.7e-304 1047.3 651 77.6
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 7.9e-304 1046.6 657 76.1
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 3.0e-303 1044.6 657 76.7
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.1e-303 1043.9 649 77.8
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 6.7e-303 1043.5 644 77.3
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 2.6e-302 1041.6 657 76.6
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 3.3e-302 1041.2 705 74.0
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 5.7e-302 1040.4 648 77.0
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 2.8e-301 1038.1 644 76.6
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 1.8e-300 1035.4 654 76.5
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.4e-300 1035.0 655 76.2
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.4e-300 1035.0 655 76.2
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 3.1e-300 1034.6 646 76.8
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 3.1e-300 1034.6 644 76.4
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 3.1e-300 1034.6 652 76.5
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 3.1e-300 1034.6 655 75.7
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 4.1e-300 1034.2 648 76.7
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 9.1e-300 1033.1 658 76.0
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 9.1e-300 1033.1 644 76.2
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.5e-299 1032.3 644 76.6
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 1.5e-299 1032.3 649 76.7
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 4.5e-299 1030.8 644 76.2
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 4.5e-299 1030.8 644 76.7
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 2.9e-298 1028.1 655 76.0
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 8.5e-298 1026.5 673 74.0
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.4e-297 1025.8 677 74.6
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 1.4e-297 1025.8 706 70.8
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 1.9e-297 1025.4 644 75.9
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 1.9e-297 1025.4 655 75.0
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 3.2e-297 1024.6 644 75.6
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 4.2e-297 1024.2 644 75.5
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 4.2e-297 1024.2 644 75.5
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 4.2e-297 1024.2 646 75.9
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 9.4e-297 1023.1 661 74.4
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 1.6e-296 1022.3 644 76.2
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 2.7e-296 1021.5 605 80.3
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 8.0e-296 1020.0 644 75.2
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 1.4e-295 1019.2 681 73.1
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.9e-295 1017.7 664 74.8
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 2.2e-293 1011.9 651 74.5
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 1.1e-292 1009.6 672 72.9
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 3.5e-291 1004.6 645 74.6
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 1.7e-290 1002.3 652 74.5
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 5.5e-289 997.3 649 74.6
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 3.6e-288 994.6 662 72.7
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 2.3e-287 991.9 678 72.4
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 2.6e-286 988.4 654 73.4
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 4.8e-285 984.2 702 69.1
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.8e-284 982.2 632 75.8
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 5.3e-284 980.7 597 80.6
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 7.0e-284 980.3 531 89.3
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 6.1e-280 967.2 659 72.2
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 2.0e-278 962.2 666 68.8
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.6e-278 961.8 682 69.5
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 7.5e-278 960.3 659 70.9
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 1.8e-276 955.7 668 70.7
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 1.6e-275 952.6 590 78.6
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.7e-274 949.1 660 69.8
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 4.7e-272 941.0 660 69.2
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 3.0e-271 938.3 665 70.1
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 1.5e-270 936.0 650 70.2
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 6.3e-269 930.6 668 67.1
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 7.0e-268 927.2 668 67.5
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 5.9e-267 924.1 658 69.0
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 8.6e-266 920.2 634 71.9
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 1.2e-264 916.4 559 77.8
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 8.0e-264 913.7 549 78.9
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 2.0e-262 909.1 559 77.6
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 4.4e-262 907.9 666 67.0
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 9.8e-262 906.7 697 66.1
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.9e-260 902.5 668 66.6
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 6.6e-258 894.0 670 66.1
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 3.3e-257 891.7 802 59.5
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.2e-251 873.2 664 65.1
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 2.3e-242 842.4 594 71.5
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 5.6e-241 837.8 644 63.7
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 2.1e-240 835.9 868 53.6
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 6.8e-239 830.9 501 78.2
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 6.9e-231 804.3 631 62.8
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 4.3e-225 785.0 475 77.3
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 9.6e-225 783.9 670 60.3
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 2.5e-212 742.7 528 70.5
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 1.0e-194 684.1 661 54.2
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 4.8e-184 648.7 492 66.7
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 4.1e-183 645.6 709 48.1
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 2.0e-182 643.3 660 51.8
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 7.7e-182 641.3 644 53.7
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.6e-174 617.1 651 52.1
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.6e-174 616.3 630 51.6
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.2e-169 600.9 510 58.8
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 7.5e-169 598.2 389 73.8
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 9.8e-169 597.8 337 84.6
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 2.4e-159 566.6 668 47.9
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 7.0e-151 538.5 338 76.9
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 3.3e-148 529.6 366 70.2
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 1.6e-142 510.8 320 75.9
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 7.8e-142 508.4 654 46.9
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.3e-133 480.3 276 81.9
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 1.2e-123 448.0 265 81.1
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.4e-122 443.7 342 67.0
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.2e-122 442.6 641 41.8
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 2.3e-117 427.2 644 40.5
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 3.0e-109 400.2 414 55.1
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 1.8e-106 391.0 373 58.2
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 3.5e-102 376.7 233 76.8
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 5.9e-81 306.2 424 42.5
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 7.7e-81 305.8 486 39.9
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 6.5e-80 302.8 491 38.9
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 2.3e-77 294.3 297 54.2
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 9.7e-76 288.9 657 30.7
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 1.1e-71 275.4 229 61.6
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 2.1e-70 271.2 233 58.8
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 7.0e-66 256.1 555 35.9
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.2e-63 246.1 201 60.2
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.7e-57 226.1 273 46.9
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 3.5e-41 174.1 139 69.8
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.8e-37 161.8 145 62.1
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 1.4e-34 152.1 228 42.5
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 2.3e-32 144.8 112 64.3
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 2.3e-32 144.8 108 67.6
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 1.7e-27 128.6 125 53.6
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 3.7e-27 127.5 79 70.9
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 3.9e-24 117.5 80 71.2
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 1.5e-23 115.5 135 47.4
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 3.3e-23 114.4 59 78.0
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 2.3e-21 108.2 61 70.5
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 1.2e-20 105.9 140 42.9
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 2.4e-18 98.2 69 60.9
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 5.4e-18 97.1 92 55.4
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 8.6e-16 89.7 65 69.2
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.6e-14 85.5 50 80.0
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 2.3e-13 81.6 79 53.2
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 8.9e-13 79.7 50 76.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 5.8e-12 77.0 54 72.2
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 7.6e-12 76.6 63 63.5
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 1.4e-10 72.4 42 78.6
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 3.2e-10 71.2 44 70.5
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 4.1e-10 70.9 74 50.0
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 9.2e-10 69.7 37 83.8
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 4.6e-09 67.4 47 68.1
SMO118G0255 Selaginella moellendorffii HOM05D000639 ORTHO05D006731 7.8e-09 66.6 237 26.6
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 1.0e-08 66.2 51 64.7
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.1e-07 62.8 48 58.3
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 2.1e-06 58.5 42 66.7
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 2.1e-06 58.5 243 25.5
AagrBONN_evm.TU.Sc2ySwM_228.3515 Anthoceros agrestis HOM05D000639 ORTHO05D004019 3.6e-06 57.8 259 27.4


User provided reference genes

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