Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 0.0e+00 1947.6 971 100.0
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 0.0e+00 1361.3 1056 68.8
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 0.0e+00 1306.6 1056 66.8
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 0.0e+00 1297.0 1058 66.9
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 0.0e+00 1236.1 1049 64.3
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 1.1e-152 545.0 1070 37.8
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.8e-142 511.1 1105 36.3
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 3.1e-142 510.4 1106 36.0
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 1.7e-140 504.6 1091 36.5
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.1e-139 501.9 1069 36.3
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 1.3e-135 488.4 1107 35.1
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 9.0e-134 482.3 1073 36.7
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.5e-131 474.2 1083 35.8
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 5.5e-131 473.0 1114 34.9
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 6.0e-130 469.5 1055 36.4
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 1.3e-129 468.4 1063 35.5
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 1.8e-129 468.0 1084 34.6
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 1.1e-128 465.3 1090 35.1
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 3.7e-127 460.3 1047 33.5
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 4.1e-126 456.8 1077 34.4
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.2e-125 455.3 1074 34.6
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.5e-125 454.9 1161 33.5
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 3.4e-125 453.8 1047 33.6
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 7.7e-125 452.6 1104 34.1
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.0e-124 452.2 1157 32.8
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.6e-122 444.9 1060 34.8
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.1e-120 438.7 1072 34.7
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 1.0e-116 425.6 1021 33.6
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 1.8e-113 414.8 1015 35.4
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 7.4e-112 409.5 1042 32.5
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 9.7e-112 409.1 1053 31.9
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.5e-109 401.7 1088 33.5
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 8.5e-108 396.0 1079 32.5
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 2.1e-106 391.3 1044 32.6
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.7e-106 390.2 1037 32.3
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 6.1e-106 389.8 1080 32.5
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 1.0e-105 389.0 1090 31.7
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 8.8e-105 386.0 1002 33.7
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 8.8e-105 386.0 1086 32.0
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 1.1e-102 379.0 1062 31.5
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.8e-102 378.3 1005 33.6
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 4.1e-102 377.1 1169 30.4
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 5.3e-102 376.7 1085 31.4
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 7.0e-102 376.3 1003 33.4
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 9.1e-102 375.9 1015 31.4
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 1.6e-101 375.2 1048 31.0
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 2.2e-100 371.3 1014 32.6
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 2.2e-100 371.3 1043 30.3
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 3.8e-100 370.5 1027 32.9
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 4.2e-99 367.1 1019 31.2
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.6e-98 365.2 1076 31.7
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 4.7e-98 363.6 1086 30.8
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 4.7e-98 363.6 1029 30.5
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.8e-97 361.7 1081 31.7
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 3.0e-97 360.9 1051 30.4
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 5.7e-96 356.7 1078 31.4
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 5.7e-96 356.7 1034 31.6
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 7.0e-94 349.7 1094 29.9
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.5e-93 347.4 1089 30.7
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.5e-92 343.2 995 30.6
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.9e-91 341.7 986 30.9
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 2.5e-91 341.3 1012 30.5
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 3.6e-90 337.4 1052 31.5
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 6.8e-89 333.2 1035 30.0
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 2.6e-88 331.3 1051 30.8
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 6.3e-87 326.6 1172 28.7
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 1.7e-84 318.5 979 30.6
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 3.8e-84 317.4 1114 29.7
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 8.6e-84 316.2 1115 29.6
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 2.5e-83 314.7 1082 30.1
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 3.3e-83 314.3 798 34.0
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 1.0e-81 309.3 566 38.2
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.8e-81 308.5 874 32.5
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 5.2e-81 307.0 1159 27.4
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 7.0e-78 296.6 1158 28.1
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.7e-76 292.0 992 29.2
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 1.7e-76 292.0 969 29.4
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 2.3e-76 291.6 983 28.9
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 6.6e-76 290.0 993 29.4
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.5e-75 288.9 1039 29.4
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.6e-74 285.4 981 29.9
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 8.9e-73 279.6 965 29.8
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 2.6e-72 278.1 960 29.1
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 3.9e-68 264.2 753 31.2
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 2.5e-67 261.5 732 32.5
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 2.5e-67 261.5 870 30.6
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 5.6e-67 260.4 732 32.2
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 5.6e-67 260.4 732 32.2
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 9.8e-64 249.6 1030 29.2
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 2.5e-59 235.0 664 30.7
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 7.8e-53 213.4 887 27.1
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 1.0e-52 213.0 421 37.1
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 2.2e-47 195.3 751 27.8
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 2.9e-47 194.9 328 38.1
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 2.1e-45 188.7 675 30.1
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.6e-42 179.1 546 28.4
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 8.1e-42 176.8 772 27.8
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 2.6e-40 171.8 1069 23.5
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 7.6e-40 170.2 312 36.5
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 2.4e-38 165.2 247 42.9
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 3.0e-36 158.3 681 26.9
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 3.0e-36 158.3 281 35.6
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 6.6e-36 157.1 642 26.6
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 3.6e-34 151.4 764 27.9
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 5.3e-33 147.5 998 24.2
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.9e-33 147.1 487 29.6
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.3e-31 142.9 955 24.0
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.7e-31 142.5 722 28.0
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 8.4e-31 140.2 751 27.0
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.1e-30 139.8 140 52.1
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.9e-30 139.0 758 26.6
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.6e-29 136.0 142 48.6
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.4e-27 127.1 130 53.8
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 9.6e-27 126.7 132 47.7
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 2.8e-26 125.2 132 50.0
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 3.7e-26 124.8 135 45.9
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 3.7e-26 124.8 309 29.1
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 8.1e-26 123.6 327 32.1
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 5.3e-25 120.9 134 45.5
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 1.2e-24 119.8 743 27.3
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 6.5e-23 114.0 133 45.9
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 6.5e-23 114.0 208 38.0
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 8.4e-23 113.6 968 23.5
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.1e-22 113.2 129 44.2
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 9.3e-22 110.2 107 50.5
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 3.0e-20 105.1 290 27.9
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 3.0e-20 105.1 310 27.7
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 5.1e-20 104.4 312 27.2
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.5e-19 102.8 715 22.8
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 3.3e-19 101.7 160 36.9
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 4.3e-19 101.3 158 43.7
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 3.7e-18 98.2 126 42.1
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 4.1e-17 94.7 432 25.2
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 9.0e-17 93.6 716 24.2
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 7.6e-16 90.5 440 25.9
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 8.4e-15 87.0 59 64.4
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 7.1e-14 84.0 263 28.9
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 7.4e-11 73.9 167 30.5
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 7.7e-08 63.9 669 22.7
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 2.9e-07 62.0 110 36.4
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 2.5e-06 58.9 669 22.9
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 7.2e-06 57.4 437 23.3
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 9.4e-06 57.0 61 44.3


User provided reference genes

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