Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 3.1e-75 285.0 144 100.0
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 4.4e-61 238.0 146 84.9
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.4e-59 232.3 142 83.1
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 3.1e-59 231.9 144 82.6
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 7.8e-34 147.5 96 78.1
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 1.2e-31 140.2 102 72.5
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 6.2e-31 137.9 92 73.9
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 8.1e-31 137.5 95 74.7
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 1.1e-30 137.1 137 60.6
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 4.0e-30 135.2 95 74.7
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 5.2e-30 134.8 82 81.7
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 5.2e-30 134.8 117 65.8
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 6.8e-30 134.4 93 69.9
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 8.9e-30 134.0 86 74.4
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 2.0e-29 132.9 89 76.4
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 2.6e-29 132.5 108 66.7
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 2.6e-29 132.5 132 57.6
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 3.4e-29 132.1 140 59.3
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 3.4e-29 132.1 102 65.7
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 4.4e-29 131.7 96 69.8
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 5.8e-29 131.3 96 72.9
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 2.2e-28 129.4 129 58.1
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 2.9e-28 129.0 90 68.9
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 4.9e-28 128.3 149 52.3
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 6.4e-28 127.9 89 70.8
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 80 75.0
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 80 75.0
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 80 75.0
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 80 75.0
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 80 75.0
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 80 75.0
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 80 75.0
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 80 75.0
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 80 75.0
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 80 75.0
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 80 75.0
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 80 75.0
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 80 75.0
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 2.4e-27 125.9 84 70.2
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 2.4e-27 125.9 70 81.4
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 2.4e-27 125.9 69 81.2
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 2.4e-27 125.9 69 81.2
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 2.4e-27 125.9 69 81.2
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 4.1e-27 125.2 80 73.8
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 5.4e-27 124.8 80 72.5
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 7.1e-27 124.4 71 80.3
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 7.1e-27 124.4 145 51.7
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 7.1e-27 124.4 80 75.0
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 7.1e-27 124.4 69 79.7
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 7.1e-27 124.4 69 79.7
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 7.1e-27 124.4 69 79.7
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 9.2e-27 124.0 145 51.7
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 1.6e-26 123.2 141 51.1
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 2.1e-26 122.9 78 78.2
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.5e-26 122.1 82 72.0
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.5e-26 122.1 82 72.0
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.5e-26 122.1 82 72.0
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 3.5e-26 122.1 92 68.5
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 6.0e-26 121.3 78 76.9
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 6.0e-26 121.3 100 66.0
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 6.0e-26 121.3 100 66.0
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 6.0e-26 121.3 100 66.0
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 1.3e-25 120.2 80 72.5
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 1.7e-25 119.8 69 76.8
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.0e-25 119.0 82 70.7
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 3.0e-25 119.0 80 73.8
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 5.1e-25 118.2 78 75.6
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 1.9e-24 116.3 137 47.4
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 5.6e-24 114.8 101 58.4
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 1.6e-23 113.2 72 73.6
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 2.8e-23 112.5 111 53.2
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 1.4e-22 110.2 68 79.4
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 1.5e-21 106.7 61 86.9
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 2.6e-21 105.9 127 52.0
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 2.6e-21 105.9 106 54.7
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 3.4e-21 105.5 82 64.6
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 3.4e-21 105.5 85 64.7
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 4.4e-21 105.1 85 63.5
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 4.4e-21 105.1 85 63.5
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 4.4e-21 105.1 107 55.1
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 4.4e-21 105.1 85 63.5
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 4.4e-21 105.1 85 63.5
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 4.4e-21 105.1 85 63.5
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 4.4e-21 105.1 85 63.5
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 4.4e-21 105.1 85 63.5
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 4.4e-21 105.1 85 63.5
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 7.6e-21 104.4 80 65.0
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 3.8e-20 102.1 85 61.2
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-20 101.7 59 76.3
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 1.4e-19 100.1 74 64.9
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 2.4e-19 99.4 78 61.5
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-19 99.4 78 61.5
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 9.3e-19 97.4 76 61.8
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 2.7e-18 95.9 73 61.6
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 3.5e-18 95.5 70 65.7
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 3.5e-18 95.5 77 62.3
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 3.5e-18 95.5 77 62.3
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 3.5e-18 95.5 77 62.3
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 3.5e-18 95.5 77 62.3
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.0e-17 92.4 144 42.4
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.9e-17 92.0 144 42.4
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 3.9e-17 92.0 125 45.6
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 5.1e-17 91.7 123 46.3
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 1.1e-16 90.5 77 59.7
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 1.9e-16 89.7 62 67.7
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 2.5e-16 89.4 73 57.5
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 3.3e-16 89.0 67 65.7
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 5.6e-16 88.2 54 72.2
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 63 63.5
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 2.1e-15 86.3 70 61.4
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 8.1e-15 84.3 76 50.0
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-12 75.9 55 61.8
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 4.9e-12 75.1 69 56.5
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 6.4e-12 74.7 60 56.7
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.1e-11 73.9 68 55.9
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.1e-11 73.9 68 55.9
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 2.4e-11 72.8 61 57.4
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.6e-10 70.1 82 53.7
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 4.6e-10 68.6 121 33.1
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 6.7e-09 64.7 35 80.0
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 6.7e-09 64.7 35 80.0
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 6.7e-09 64.7 35 80.0
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 6.7e-09 64.7 76 42.1
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 1.5e-08 63.5 80 45.0
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 3.3e-08 62.4 47 63.8
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 9.6e-08 60.8 82 48.8
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.3e-07 60.5 80 43.8
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 3.7e-07 58.9 41 70.7
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 6.2e-07 58.2 80 47.5
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 8.1e-07 57.8 42 64.3
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 1.1e-06 57.4 41 63.4
MELO3C027952.2 Cucumis melo HOM05D002824 ORTHO05D008771 6.9e-06 54.7 63 55.6
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 6.9e-06 54.7 38 68.4


User provided reference genes

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