Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 2.2e-137 492.3 242 100.0
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 1.5e-109 399.8 243 80.7
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 4.7e-108 394.8 245 78.8
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 6.2e-108 394.4 243 79.4
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 2.0e-106 389.4 243 79.0
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 1.4e-80 303.5 240 63.8
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 2.7e-79 299.3 244 62.3
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 6.0e-79 298.1 244 64.3
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 1.0e-78 297.4 242 63.2
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 5.1e-78 295.0 239 65.3
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 1.1e-77 293.9 245 61.6
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 4.3e-77 292.0 239 63.6
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 7.3e-77 291.2 211 69.2
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 9.6e-77 290.8 241 63.1
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 2.1e-76 289.7 239 61.5
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 3.6e-76 288.9 241 62.2
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 4.8e-76 288.5 239 61.1
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 4.8e-76 288.5 239 61.5
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 1.8e-75 286.6 222 64.4
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 3.1e-75 285.8 308 51.9
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 4.0e-75 285.4 244 62.7
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 5.3e-75 285.0 243 63.0
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 6.9e-75 284.6 239 60.7
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 1.3e-73 280.4 241 60.2
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 2.9e-73 279.3 251 59.8
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 4.9e-73 278.5 244 59.8
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 4.9e-73 278.5 239 61.9
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.9e-72 276.6 248 61.3
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 3.2e-72 275.8 236 61.4
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 3.2e-72 275.8 246 60.6
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 4.2e-72 275.4 180 75.6
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 4.2e-72 275.4 180 75.6
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 5.4e-72 275.0 242 61.6
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 7.1e-72 274.6 229 62.4
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 9.3e-72 274.2 236 61.4
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 1.2e-71 273.9 188 72.3
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 1.2e-71 273.9 242 61.6
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 1.2e-71 273.9 253 59.7
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 2.1e-71 273.1 240 61.7
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 2.1e-71 273.1 190 68.4
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 2.7e-71 272.7 175 73.1
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.7e-71 272.7 190 68.4
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 3.5e-71 272.3 175 73.1
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 4.6e-71 271.9 175 72.6
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 6.0e-71 271.6 190 68.4
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 6.0e-71 271.6 236 60.2
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 2.3e-70 269.6 170 75.3
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 8.7e-70 267.7 237 59.5
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 1.5e-69 266.9 182 70.3
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 1.5e-69 266.9 199 67.8
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 1.5e-69 266.9 183 71.0
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 2.5e-69 266.2 225 63.6
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.3e-69 265.8 200 65.0
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 3.3e-69 265.8 239 59.8
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 9.6e-69 264.2 155 78.7
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 1.6e-68 263.5 239 61.5
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 1.6e-68 263.5 156 80.1
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 1.6e-68 263.5 237 59.9
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.8e-68 261.9 198 67.7
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 8.1e-68 261.2 288 52.4
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 1.4e-67 260.4 155 78.7
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 1.8e-67 260.0 203 64.5
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.1e-67 259.2 167 73.1
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 3.1e-67 259.2 157 79.6
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 6.9e-67 258.1 200 63.5
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 6.9e-67 258.1 157 76.4
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 9.0e-67 257.7 156 78.2
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 2.0e-66 256.5 154 77.9
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 2.6e-66 256.1 177 70.1
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 3.4e-66 255.8 181 69.1
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 4.5e-66 255.4 155 77.4
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 5.8e-66 255.0 207 63.3
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 1.0e-65 254.2 184 68.5
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 1.3e-65 253.8 221 60.6
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.3e-65 253.8 153 78.4
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 2.2e-65 253.1 197 64.5
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 2.2e-65 253.1 152 79.6
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 2.9e-65 252.7 154 77.3
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 4.9e-65 251.9 156 75.0
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 4.9e-65 251.9 177 70.6
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 8.4e-65 251.1 157 73.2
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 8.4e-65 251.1 209 63.6
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 8.4e-65 251.1 155 75.5
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 8.4e-65 251.1 155 75.5
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 8.4e-65 251.1 155 75.5
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 3.2e-64 249.2 206 63.6
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 4.2e-64 248.8 157 72.0
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 1.2e-63 247.3 156 73.1
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 1.6e-63 246.9 157 71.3
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 2.1e-63 246.5 209 58.9
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 2.1e-63 246.5 157 75.8
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 7.9e-63 244.6 168 70.8
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 5.1e-62 241.9 147 76.2
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 6.7e-62 241.5 161 72.0
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 1.9e-61 240.0 294 48.6
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 7.4e-61 238.0 157 73.2
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 9.6e-61 237.7 191 64.4
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 5.8e-58 228.4 194 60.8
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 1.9e-56 223.4 154 66.2
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 1.9e-56 223.4 154 66.2
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 4.2e-56 222.2 148 69.6
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 3.5e-55 219.2 184 60.3
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 8.7e-54 214.5 154 68.2
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 2.5e-53 213.0 153 65.4
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 4.8e-52 208.8 174 60.9
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 9.0e-51 204.5 206 55.8
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 2.6e-50 203.0 139 73.4
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 2.9e-49 199.5 160 57.5
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 1.6e-47 193.7 142 61.3
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 4.6e-47 192.2 130 70.8
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 2.8e-44 183.0 172 55.8
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 4.2e-40 169.1 140 61.4
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 9.7e-37 157.9 151 52.3
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 3.1e-35 152.9 83 81.9
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.5e-32 144.1 132 59.1
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.5e-32 144.1 132 59.1
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 1.2e-31 141.0 131 57.3
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.6e-26 124.0 88 71.6
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 2.7e-26 123.2 104 51.0
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 7.2e-24 115.2 117 43.6
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 9.4e-24 114.8 119 47.1
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 4.0e-22 109.4 111 51.4
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 9.8e-21 104.8 130 42.3
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 1.2e-15 87.8 136 42.6
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 1.5e-13 80.9 83 54.2
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 4.5e-10 69.3 37 78.4
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.5e-08 64.3 110 41.8
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 7.3e-08 62.0 76 44.7
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 6.8e-06 55.5 94 37.2


User provided reference genes

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