Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 3.4e-142 508.4 278 100.0
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 1.0e-122 443.7 257 94.9
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 2.3e-122 442.6 257 94.6
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 6.0e-115 417.9 257 90.7
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 3.3e-113 412.1 224 88.8
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 4.3e-113 411.8 257 88.3
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.1e-111 407.1 258 89.1
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.8e-111 406.4 257 80.2
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 2.4e-111 406.0 224 88.4
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 2.4e-111 406.0 257 80.5
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 2.4e-111 406.0 224 88.8
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 3.1e-111 405.6 224 89.7
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 5.2e-111 404.8 224 88.4
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 5.2e-111 404.8 257 86.8
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 6.8e-111 404.4 224 88.4
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 6.8e-111 404.4 257 86.4
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 8.9e-111 404.1 257 84.0
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 1.2e-110 403.7 259 86.1
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 1.5e-110 403.3 227 87.2
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 2.6e-110 402.5 257 87.2
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 2.6e-110 402.5 257 78.6
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 2.6e-110 402.5 223 87.9
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 4.4e-110 401.7 257 80.2
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 4.4e-110 401.7 257 80.2
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 5.8e-110 401.4 224 87.9
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 7.6e-110 401.0 225 88.0
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 9.9e-110 400.6 257 86.8
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 9.9e-110 400.6 225 88.4
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 2.2e-109 399.4 224 87.5
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 6.4e-109 397.9 224 87.1
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.1e-108 397.1 257 79.4
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.1e-108 397.1 257 82.1
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 4.2e-108 395.2 257 79.0
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 9.2e-108 394.0 257 77.4
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 1.2e-107 393.7 224 86.6
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.6e-107 393.3 258 81.8
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.6e-107 393.3 223 87.0
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.6e-107 393.3 259 85.7
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.7e-107 392.5 224 86.6
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 3.5e-107 392.1 224 86.2
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 4.6e-107 391.7 224 85.3
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 4.6e-107 391.7 260 83.8
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 6.0e-107 391.3 224 86.6
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 6.0e-107 391.3 224 86.6
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 7.8e-107 391.0 224 86.6
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 1.3e-106 390.2 224 87.1
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.3e-106 389.4 257 76.7
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 3.9e-106 388.7 225 85.8
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.9e-106 388.7 257 77.8
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 8.7e-106 387.5 225 86.2
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 8.7e-106 387.5 224 86.2
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 1.1e-105 387.1 223 85.7
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 3.3e-105 385.6 224 84.4
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 7.3e-105 384.4 251 78.9
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 1.6e-104 383.3 257 76.7
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.8e-104 382.5 256 77.3
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 8.1e-104 380.9 224 82.6
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 8.1e-104 380.9 226 84.5
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.4e-103 379.4 257 75.9
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 6.9e-103 377.9 224 80.8
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.2e-102 377.1 224 79.9
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 1.5e-102 376.7 257 73.9
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 1.5e-102 376.7 257 82.1
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 3.4e-102 375.6 224 79.9
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.6e-102 374.4 257 78.6
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 3.8e-101 372.1 258 73.6
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 4.9e-101 371.7 240 77.9
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.1e-100 370.5 257 72.0
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 4.2e-100 368.6 278 70.9
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 5.4e-100 368.2 258 73.3
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 2.1e-99 366.3 257 75.5
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.5e-99 365.5 263 77.9
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 7.8e-99 364.4 225 79.1
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 7.8e-99 364.4 257 73.2
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 7.8e-99 364.4 226 79.2
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 1.0e-98 364.0 228 79.8
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 3.0e-98 362.5 228 79.4
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 3.0e-98 362.5 300 65.3
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 5.1e-98 361.7 257 72.4
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 5.1e-98 361.7 224 79.9
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 6.6e-98 361.3 224 78.6
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 8.7e-98 360.9 224 79.5
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.1e-97 360.5 225 80.0
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.1e-97 360.5 225 80.0
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 4.3e-97 358.6 226 78.8
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 1.6e-96 356.7 248 75.8
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 2.1e-96 356.3 225 79.1
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 2.8e-96 355.9 263 70.7
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 3.6e-96 355.5 232 77.2
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 4.8e-96 355.1 224 78.6
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 6.2e-96 354.8 225 80.0
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 6.2e-96 354.8 232 78.0
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 8.1e-96 354.4 261 72.4
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 1.2e-94 350.5 224 78.6
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.2e-94 350.5 224 72.3
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 1.2e-94 350.5 297 69.7
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 3.4e-94 349.0 248 72.6
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.7e-93 346.7 259 67.2
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 1.7e-93 346.7 226 77.9
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 2.2e-93 346.3 257 71.6
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.2e-91 340.5 224 77.7
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.2e-91 340.5 224 77.7
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.7e-91 339.3 257 65.8
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 1.0e-90 337.4 247 71.7
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 5.1e-90 335.1 227 73.1
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 6.7e-90 334.7 227 72.7
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.5e-89 333.6 224 72.8
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 1.6e-88 330.1 227 71.8
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 4.0e-87 325.5 213 77.9
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 6.9e-87 324.7 232 75.0
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.3e-85 320.5 218 76.1
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.4e-84 317.0 224 67.4
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.5e-84 316.2 217 71.9
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 6.7e-82 308.1 215 70.2
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 4.5e-78 295.4 213 70.9
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 3.0e-74 282.7 232 63.4
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 5.1e-74 282.0 224 67.9
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.1e-73 280.8 226 66.4
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.1e-73 280.8 226 66.4
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.5e-73 280.4 229 62.4
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 3.3e-73 279.3 232 62.5
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 9.7e-73 277.7 227 63.4
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 4.1e-71 272.3 227 63.4
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.8e-69 265.8 156 85.3
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 8.5e-69 264.6 243 58.0
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 8.2e-64 248.1 230 57.8
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.3e-55 218.8 154 66.2
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.0e-53 214.5 141 76.6
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 1.4e-52 210.7 132 81.1
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 3.3e-49 199.5 132 76.5
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 7.0e-47 191.8 104 85.6
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 9.1e-47 191.4 129 75.2
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 2.0e-46 190.3 96 91.7
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 1.0e-42 177.9 137 67.2
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 5.2e-42 175.6 196 56.6
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 1.7e-40 170.6 128 67.2
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 2.2e-40 170.2 104 78.8
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 1.4e-39 167.5 122 72.1
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.5e-36 156.8 78 93.6
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.4e-34 151.0 98 77.6
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 3.1e-31 139.8 112 65.2
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 9.1e-31 138.3 116 75.0
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.0e-29 134.8 253 39.9
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 5.0e-29 132.5 230 37.0
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 2.8e-27 126.7 112 63.4
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 4.7e-27 125.9 120 59.2
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 4.7e-27 125.9 120 59.2
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 6.1e-27 125.6 107 65.4
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 1.4e-26 124.4 237 31.6
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 2.3e-26 123.6 112 60.7
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 2.3e-26 123.6 112 60.7
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 3.0e-26 123.2 112 61.6
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 3.4e-25 119.8 112 60.7
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 5.7e-25 119.0 120 57.5
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 9.8e-25 118.2 230 34.8
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 6.6e-21 105.5 233 32.6
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 3.3e-20 103.2 89 61.8
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 3.3e-20 103.2 89 61.8
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 9.5e-20 101.7 67 77.6
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 4.7e-19 99.4 89 60.7
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 1.4e-18 97.8 85 62.4
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.7e-16 89.7 45 95.6
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 1.3e-13 81.3 45 77.8
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 6.6e-13 79.0 43 86.0
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 1.2e-09 68.2 38 81.6
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 1.7e-08 64.3 32 87.5


User provided reference genes

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