Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 1.1e-148 530.0 272 100.0
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 4.1e-116 421.8 226 93.4
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 1.8e-111 406.4 226 90.3
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 2.6e-107 392.5 226 89.4
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 1.0e-90 337.4 242 72.7
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 8.0e-88 327.8 231 73.2
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 8.0e-88 327.8 231 74.5
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 8.8e-87 324.3 231 73.6
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.1e-86 323.9 231 73.6
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 3.3e-86 322.4 230 71.3
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.3e-86 322.4 231 71.0
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.3e-86 322.4 252 68.3
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 3.3e-86 322.4 234 70.9
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 3.3e-86 322.4 234 70.9
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 3.7e-85 318.9 233 70.8
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 6.3e-85 318.2 232 71.6
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 8.2e-85 317.8 231 71.0
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 4.1e-84 315.5 255 67.1
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 5.3e-84 315.1 233 70.4
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 9.1e-84 314.3 233 70.4
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 9.1e-84 314.3 233 70.4
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 1.6e-83 313.5 232 68.1
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 2.0e-83 313.2 233 70.4
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 4.5e-83 312.0 239 67.4
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 5.9e-83 311.6 233 69.5
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 7.7e-83 311.2 230 68.7
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 1.3e-82 310.5 233 68.7
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 1.3e-82 310.5 229 70.7
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.3e-82 310.5 233 70.0
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.7e-82 310.1 231 69.7
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 1.7e-82 310.1 231 69.3
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 2.2e-82 309.7 231 69.7
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 2.9e-82 309.3 232 67.7
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 2.9e-82 309.3 230 68.7
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 3.8e-82 308.9 230 70.0
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 5.0e-82 308.5 231 68.0
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 5.0e-82 308.5 230 68.7
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 6.5e-82 308.1 232 69.0
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 6.5e-82 308.1 232 67.7
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 6.5e-82 308.1 233 68.7
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 8.5e-82 307.8 231 68.4
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 1.5e-81 307.0 232 69.0
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 1.5e-81 307.0 232 69.0
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 1.5e-81 307.0 230 67.8
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 1.9e-81 306.6 237 68.4
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 2.5e-81 306.2 233 69.1
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 3.2e-81 305.8 231 67.1
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 3.2e-81 305.8 231 70.1
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 3.2e-81 305.8 231 68.4
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 3.2e-81 305.8 234 67.5
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 4.2e-81 305.4 232 68.5
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 4.2e-81 305.4 232 69.0
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 4.2e-81 305.4 232 67.7
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 5.5e-81 305.1 248 66.5
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 5.5e-81 305.1 231 69.3
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 5.5e-81 305.1 231 68.8
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 7.2e-81 304.7 231 68.4
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 7.2e-81 304.7 247 66.0
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.4e-81 304.3 232 69.0
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 1.2e-80 303.9 234 68.4
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 1.2e-80 303.9 231 68.8
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.6e-80 303.5 231 68.4
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.6e-80 303.5 231 68.4
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 3.6e-80 302.4 232 68.5
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.6e-80 302.4 231 67.5
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 6.1e-80 301.6 234 68.4
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 8.0e-80 301.2 227 68.7
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 8.0e-80 301.2 231 68.8
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 1.8e-79 300.1 230 69.6
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 1.8e-79 300.1 232 65.9
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.2e-78 297.4 231 67.1
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 1.5e-78 297.0 290 56.9
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 1.5e-78 297.0 225 69.3
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 2.0e-78 296.6 233 67.8
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 2.6e-78 296.2 231 67.1
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 2.6e-78 296.2 233 67.4
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 3.4e-78 295.8 227 67.0
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 3.4e-78 295.8 233 64.8
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 5.7e-78 295.0 249 62.2
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 7.5e-78 294.7 244 65.2
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 1.3e-77 293.9 233 67.4
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 1.3e-77 293.9 231 67.5
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 1.3e-77 293.9 231 67.5
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.7e-77 293.5 263 59.7
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.2e-77 293.1 231 68.0
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 2.2e-77 293.1 230 67.4
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 2.2e-77 293.1 231 65.8
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 2.8e-77 292.7 232 64.7
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 3.7e-77 292.4 230 66.5
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 3.7e-77 292.4 231 67.1
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.1e-76 290.8 231 66.2
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 1.4e-76 290.4 232 65.5
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 4.1e-76 288.9 231 65.8
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 4.1e-76 288.9 231 65.8
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 4.1e-76 288.9 231 66.7
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 5.4e-76 288.5 233 64.8
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.4e-76 288.5 231 67.1
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 5.4e-76 288.5 232 66.4
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 5.4e-76 288.5 239 64.9
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 7.0e-76 288.1 233 64.8
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 7.0e-76 288.1 233 64.8
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 9.1e-76 287.7 246 64.2
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 1.2e-75 287.3 231 64.5
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 2.7e-75 286.2 233 66.1
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 3.5e-75 285.8 233 64.4
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 3.5e-75 285.8 237 64.6
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 4.5e-75 285.4 234 64.5
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 1.7e-74 283.5 243 63.0
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 2.2e-74 283.1 233 64.8
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 5.0e-74 282.0 229 64.6
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 8.5e-74 281.2 231 64.1
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 3.2e-73 279.3 232 62.9
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 4.2e-73 278.9 223 65.9
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 5.5e-73 278.5 339 49.9
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 6.1e-72 275.0 234 62.8
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 6.1e-72 275.0 233 62.7
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 3.0e-71 272.7 227 63.4
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 6.8e-71 271.6 231 61.5
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 9.8e-70 267.7 242 59.9
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 2.4e-68 263.1 232 62.5
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 4.1e-68 262.3 232 62.1
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 2.7e-67 259.6 234 61.5
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 5.0e-66 255.4 233 59.7
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 6.6e-66 255.0 279 52.7
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 9.5e-65 251.1 229 60.3
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 2.1e-64 250.0 291 51.5
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 2.1e-64 250.0 195 66.7
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 3.6e-64 249.2 228 60.1
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.8e-63 246.9 196 66.3
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 8.9e-63 244.6 227 59.9
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 9.2e-60 234.6 237 57.4
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 9.2e-60 234.6 190 62.1
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 1.3e-58 230.7 201 63.2
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 3.0e-58 229.6 250 54.0
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 3.9e-58 229.2 301 47.5
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 6.6e-58 228.4 268 53.4
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.8e-56 223.0 231 54.5
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.0e-55 221.1 283 48.1
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 6.4e-53 211.8 181 63.0
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.1e-52 211.1 230 55.7
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 2.8e-48 196.4 224 50.4
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 2.3e-47 193.4 232 49.6
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.2e-45 186.8 161 65.8
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 1.9e-44 183.7 126 71.4
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 1.9e-44 183.7 222 48.6
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 4.1e-44 182.6 153 64.1
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 2.1e-43 180.3 196 53.6
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 2.1e-43 180.3 236 45.8
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.5e-41 174.1 229 45.4
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 7.3e-41 171.8 131 64.1
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 6.2e-40 168.7 114 69.3
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.2e-39 165.6 212 48.6
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 4.4e-38 162.5 190 51.1
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 4.4e-38 162.5 203 48.8
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 2.9e-37 159.8 117 69.2
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 4.9e-37 159.1 132 60.6
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 4.9e-37 159.1 130 59.2
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 6.0e-35 152.1 134 59.0
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 3.9e-34 149.4 109 66.1
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 3.9e-34 149.4 109 66.1
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 6.6e-34 148.7 233 40.3
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 1.9e-28 130.6 133 57.1
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.4e-28 130.2 178 44.9
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 4.6e-27 125.9 69 84.1
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.3e-26 124.4 160 46.9
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.3e-26 123.6 86 67.4
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 3.0e-26 123.2 105 61.0
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 3.9e-26 122.9 175 44.0
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.1e-25 121.3 76 76.3
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 2.1e-24 117.1 145 51.0
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 9.3e-20 101.7 78 66.7
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 3.5e-19 99.8 202 37.6
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 4.6e-19 99.4 74 67.6
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 3.6e-16 89.7 74 63.5
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 1.6e-11 74.3 56 62.5
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.3e-10 71.2 100 38.0


User provided reference genes

Program Settings