Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 0.0e+00 1429.5 723 100.0
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 0.0e+00 1180.6 732 84.8
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 0.0e+00 1172.5 691 87.6
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 9.3e-277 956.8 731 68.7
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 3.0e-275 951.8 715 69.8
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 1.0e-267 926.8 708 68.1
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 4.8e-265 917.9 708 68.2
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 8.5e-262 907.1 563 83.8
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 8.5e-262 907.1 740 64.7
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 1.1e-261 906.7 701 67.3
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 4.2e-261 904.8 698 66.8
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 1.2e-260 903.3 721 66.6
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 3.6e-260 901.7 740 64.5
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 3.0e-259 898.7 727 65.6
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 5.1e-259 897.9 711 65.5
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 2.2e-254 882.5 719 65.8
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 6.5e-254 880.9 715 66.2
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 2.5e-253 879.0 704 65.2
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 2.1e-252 875.9 699 67.4
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 3.6e-252 875.2 726 63.8
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 4.6e-252 874.8 709 64.7
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 7.9e-252 874.0 715 65.7
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.4e-248 863.2 747 62.2
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 5.3e-248 861.3 745 62.7
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 9.1e-248 860.5 709 63.9
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 4.5e-247 858.2 723 64.2
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 1.7e-246 856.3 723 63.3
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 2.2e-246 855.9 747 62.4
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 9.4e-245 850.5 723 62.7
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 9.4e-245 850.5 706 64.6
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 1.1e-242 843.6 716 61.9
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 1.1e-242 843.6 693 63.8
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 7.4e-242 840.9 706 63.0
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 1.1e-240 837.0 699 65.1
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 3.1e-240 835.5 709 63.6
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 4.1e-240 835.1 722 61.2
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 9.1e-240 833.9 726 62.3
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 2.0e-239 832.8 727 63.5
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 2.9e-238 828.9 709 63.2
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 5.0e-238 828.2 706 63.7
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 6.5e-238 827.8 738 61.8
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 1.5e-237 826.6 710 60.8
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 1.9e-237 826.2 734 61.9
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 2.5e-237 825.9 709 62.9
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 2.5e-237 825.9 713 62.1
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 5.5e-237 824.7 723 63.2
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 7.2e-237 824.3 713 61.6
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 2.1e-236 822.8 724 63.1
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 1.8e-235 819.7 721 63.2
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 4.0e-235 818.5 633 67.1
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 8.8e-235 817.4 709 61.4
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.3e-233 813.5 696 61.8
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 3.7e-233 812.0 718 63.0
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 1.4e-232 810.1 715 61.3
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 1.6e-231 806.6 751 58.9
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.0e-230 803.9 727 60.2
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 3.8e-230 802.0 698 61.7
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 1.6e-228 796.6 706 62.2
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 1.2e-226 790.4 718 60.6
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 1.5e-226 790.0 729 59.4
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 9.8e-226 787.3 721 58.7
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 4.8e-225 785.0 715 61.1
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 1.0e-222 777.3 665 63.3
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 1.5e-221 773.5 638 63.6
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 2.5e-221 772.7 545 72.5
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 2.3e-219 766.1 784 54.2
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 2.8e-217 759.2 692 61.0
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 1.4e-216 756.9 704 58.0
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.7e-214 750.0 697 58.1
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 1.5e-213 746.9 605 66.0
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 8.0e-212 741.1 689 58.1
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.7e-207 726.1 699 58.2
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 3.5e-207 725.7 735 57.3
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 2.3e-206 723.0 563 66.8
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 4.7e-204 715.3 730 55.3
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 1.2e-196 690.6 547 65.4
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.8e-195 686.8 702 54.8
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 1.7e-193 680.2 727 54.3
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 1.1e-192 677.6 507 69.6
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 2.1e-191 673.3 448 76.1
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 4.6e-191 672.2 571 63.0
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 2.2e-185 653.3 503 67.2
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 2.4e-179 633.3 696 51.7
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 4.0e-179 632.5 695 52.5
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 9.9e-178 627.9 696 51.9
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 2.9e-177 626.3 726 46.7
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 6.4e-169 598.6 720 48.5
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 1.9e-165 587.0 421 71.7
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 9.0e-155 551.6 719 45.5
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 8.4e-153 545.0 494 59.3
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 2.0e-146 523.9 503 58.4
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.3e-140 504.6 356 71.6
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.2e-140 503.8 355 72.1
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 5.0e-137 492.7 356 69.9
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 6.5e-137 492.3 354 70.6
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 2.1e-135 487.3 354 70.3
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 3.1e-131 473.4 415 59.5
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 1.2e-127 461.5 785 40.5
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 4.1e-123 446.4 361 62.6
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 1.2e-114 418.3 755 36.4
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 9.4e-112 408.7 807 34.1
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.2e-109 401.7 293 72.4
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 7.5e-109 399.1 707 38.6
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 3.1e-107 393.7 311 65.9
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 2.5e-96 357.5 339 56.6
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.8e-94 351.3 317 57.7
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 1.7e-89 334.7 314 57.6
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 1.8e-86 324.7 743 33.1
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.9e-67 261.5 314 48.4
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 7.1e-67 259.6 192 67.7
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 9.2e-67 259.2 206 66.5
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 1.1e-62 245.7 252 56.3
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 2.0e-61 241.5 222 57.7
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 4.2e-59 233.8 172 69.2
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 2.1e-58 231.5 654 30.9
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 2.1e-55 221.5 183 63.9
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.9e-52 211.1 136 83.8
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.9e-51 208.4 269 48.3
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 6.0e-50 203.4 145 77.2
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.1e-47 194.9 128 82.8
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 6.2e-47 193.4 166 64.5
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 1.1e-46 192.6 201 53.2
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.8e-46 191.8 185 55.7
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 3.4e-45 187.6 147 59.9
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 6.7e-33 146.7 134 56.0
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 6.3e-23 113.6 140 49.3
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.4e-22 112.5 156 46.2
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 1.7e-20 105.5 143 46.9
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 9.1e-14 83.2 64 68.8
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 2.5e-11 75.1 81 55.6
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.4e-09 69.3 51 58.8
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 8.8e-09 66.6 76 44.7
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 4.4e-08 64.3 35 94.3


User provided reference genes

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