Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014493 Sechium edule HOM05D000104 ORTHO05D006397 1.1e-167 593.2 307 100.0
CsaV3_2G009970 Cucumis sativus L. HOM05D000104 ORTHO05D006397 2.7e-124 449.1 290 83.1
MELO3C008639.2 Cucumis melo HOM05D000104 ORTHO05D006397 3.6e-121 438.7 296 80.4
ClCG11G010390 Citrullus lanatus HOM05D000104 ORTHO05D006397 6.8e-112 407.9 263 82.1
CANSAT54G2768 Cannabis sativa HOM05D000104 ORTHO05D006397 3.3e-98 362.5 282 68.1
CiPaw.08G118700 Carya illinoinensis HOM05D000104 ORTHO05D006397 4.3e-98 362.1 282 69.5
Thecc.05G267600 Theobroma cacao HOM05D000104 ORTHO05D006397 3.6e-97 359.0 282 68.1
QL03p029602 Quercus lobata HOM05D000104 ORTHO05D006397 8.1e-97 357.8 286 69.2
Manes.09G147000 Manihot esculenta HOM05D000104 ORTHO05D006397 9.0e-96 354.4 290 66.9
Duzib128G0174 Durio zibethinus HOM05D000104 ORTHO05D006397 1.5e-95 353.6 290 66.9
MD00G1149200 Malus domestica HOM05D000104 ORTHO05D006397 1.4e-93 347.1 287 68.6
TWI60G0140 Tripterygium wilfordii HOM05D000104 ORTHO05D006397 1.4e-93 347.1 283 66.4
Prupe.6G351600 Prunus persica HOM05D000104 ORTHO05D006397 5.4e-93 345.1 278 68.3
CSS0004215 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006397 9.3e-93 344.4 282 66.7
Gohir.D11G255300 Gossypium hirsutum HOM05D000104 ORTHO05D006397 7.9e-92 341.3 291 64.6
MD04G1232200 Malus domestica HOM05D000104 ORTHO05D006397 1.0e-91 340.9 288 67.0
Actinidia34760 Actinidia chinensis HOM05D000104 ORTHO05D006397 1.3e-91 340.5 282 66.0
Potri.019G021500 Populus trichocarpa HOM05D000104 ORTHO05D006397 1.3e-91 340.5 282 66.3
Gorai.007G273900 Gossypium raimondii HOM05D000104 ORTHO05D006397 3.0e-91 339.3 291 64.3
Gohir.A11G245400 Gossypium hirsutum HOM05D000104 ORTHO05D006397 5.1e-91 338.6 291 64.6
Dinv12942 Davidia involucrata HOM05D000104 ORTHO05D006397 6.6e-91 338.2 282 65.2
vmacro10381 Vaccinium macrocarpon HOM05D000104 ORTHO05D006397 8.7e-91 337.8 282 63.8
Ciclev10030509m.g Citrus clementina HOM05D000104 ORTHO05D006397 3.3e-90 335.9 281 65.1
Sabra19G0033000 Salix brachista HOM05D000104 ORTHO05D006397 7.4e-90 334.7 282 64.9
FAN14G5045 Fragaria x ananassa HOM05D000104 ORTHO05D006397 9.6e-90 334.3 294 64.6
FvH4_6g01581 Fragaria vesca HOM05D000104 ORTHO05D006397 1.6e-89 333.6 288 65.3
FAN09G4154 Fragaria x ananassa HOM05D000104 ORTHO05D006397 2.1e-89 333.2 289 65.7
TAR362G0360 Trochodendron aralioides HOM05D000104 ORTHO05D006397 2.8e-89 332.8 290 62.4
Eucgr.H04218 Eucalyptus grandis HOM05D000104 ORTHO05D006397 1.2e-87 327.4 290 61.7
GSVIVG01023393001 Vitis vinifera HOM05D000104 ORTHO05D006397 1.5e-87 327.0 252 68.7
PGR004G1676 Punica granatum HOM05D000104 ORTHO05D006397 4.5e-87 325.5 283 63.6
RcHm_v2.0_Chr3g0449401 Rosa chinensis HOM05D000104 ORTHO05D006397 1.7e-86 323.6 235 71.9
Ca_10025_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006397 4.9e-86 322.0 283 65.7
Atru.chr2.1068 Acer truncatum HOM05D000104 ORTHO05D006397 1.1e-85 320.9 282 61.3
ECA238G2794 Erigeron canadensis HOM05D000104 ORTHO05D006397 1.9e-85 320.1 285 63.2
FAN05G1722 Fragaria x ananassa HOM05D000104 ORTHO05D006397 5.5e-85 318.5 287 63.1
FAN05G2560 Fragaria x ananassa HOM05D000104 ORTHO05D006397 5.5e-85 318.5 287 63.1
FAN02G0967 Fragaria x ananassa HOM05D000104 ORTHO05D006397 9.3e-85 317.8 287 63.1
Sc09g0001860 Simmondsia chinensis HOM05D000104 ORTHO05D006397 9.3e-85 317.8 280 62.5
Potri.013G048500 Populus trichocarpa HOM05D000104 ORTHO05D006397 1.6e-84 317.0 289 61.2
TPR.G26620 Trifolium pratense HOM05D000104 ORTHO05D006397 5.1e-83 312.0 279 63.8
Nn1g02987 Nelumbo nucifera HOM05D000104 ORTHO05D006397 1.1e-82 310.8 282 59.6
VMungo0720G2029 Vigna mungo HOM05D000104 ORTHO05D006397 2.5e-82 309.7 280 64.3
arahy.Tifrunner.gnm1.ann1.21AGFE Arachis hypogaea HOM05D000104 ORTHO05D006397 2.1e-81 306.6 280 62.5
arahy.Tifrunner.gnm1.ann1.N8MZL6 Arachis hypogaea HOM05D000104 ORTHO05D006397 2.1e-81 306.6 280 62.5
HanXRQChr11g0327241 Helianthus annuus HOM05D000104 ORTHO05D006397 2.1e-81 306.6 277 61.7
A06p05580 Brassica napus HOM05D000329 ORTHO05D006397 3.7e-81 305.8 267 61.8
Psat6g144360 Pisum sativum HOM05D000104 ORTHO05D006397 3.7e-81 305.8 279 63.1
Lsat_1_v5_gn_2_15881 Lactuca sativa HOM05D000104 ORTHO05D006397 4.8e-81 305.4 277 61.0
BraA06t23766Z Brassica rapa HOM05D000329 ORTHO05D006397 8.1e-81 304.7 267 61.4
BolC5t29429H Brassica oleracea HOM05D000104 ORTHO05D006397 1.1e-80 304.3 267 61.0
Lalb_Chr06g0168221 Lupinus albus HOM05D000104 ORTHO05D006397 1.1e-80 304.3 280 62.5
Glyma.10G165000 Glycine max HOM05D000104 ORTHO05D006397 2.4e-80 303.1 280 62.1
BcaB07g34102 Brassica carinata HOM05D000104 ORTHO05D006397 6.9e-80 301.6 267 60.7
C05p06690 Brassica napus HOM05D000104 ORTHO05D006397 6.9e-80 301.6 267 60.7
Aa31sc449G60 Aethionema arabicum HOM05D000104 ORTHO05D006397 2.0e-79 300.1 269 59.5
AT1G08600 Arabidopsis thaliana HOM05D000104 ORTHO05D006397 2.6e-79 299.7 261 61.3
Medtr1g080420 Medicago truncatula HOM05D000104 ORTHO05D006397 3.4e-79 299.3 277 62.1
Rhsim09G0133300 Rhododendron simsii HOM05D000104 ORTHO05D006397 3.4e-79 299.3 231 66.2
AL1G19030 Arabidopsis lyrata HOM05D000104 ORTHO05D006397 4.5e-79 298.9 261 61.3
THA.LOC104805785 Tarenaya hassleriana HOM05D000104 ORTHO05D006397 5.8e-79 298.5 269 60.2
EL10Ac4g09754 Beta vulgaris HOM05D000104 ORTHO05D006397 1.0e-78 297.7 279 59.5
Phvul.L001951 Phaseolus vulgaris HOM05D000104 ORTHO05D006397 2.9e-78 296.2 280 61.4
Sp1g07260 Schrenkiella parvula HOM05D000104 ORTHO05D006397 2.9e-78 296.2 267 58.4
Lj5g0000218 Lotus japonicus HOM05D000104 ORTHO05D006397 1.1e-77 294.3 277 61.7
Thhalv10006555m.g Eutrema salsugineum HOM05D000104 ORTHO05D006397 1.9e-77 293.5 262 60.3
COL.COLO4_15520 Corchorus olitorius HOM05D000104 ORTHO05D006397 7.1e-77 291.6 278 57.2
CARHR008500 Cardamine hirsuta HOM05D000104 ORTHO05D006397 9.3e-77 291.2 269 59.9
Sabra13G0044700 Salix brachista HOM05D000104 ORTHO05D006397 2.1e-76 290.0 257 62.3
Ah.02g118350 Amaranthus hybridus HOM05D000104 ORTHO05D006397 4.6e-76 288.9 280 59.6
Sopen04g020860 Solanum pennellii HOM05D000104 ORTHO05D006397 6.0e-76 288.5 235 64.7
Aqoxy5G00143 Aquilegia oxysepala HOM05D000104 ORTHO05D006397 7.9e-76 288.1 292 54.8
Glyma.20G227200 Glycine max HOM05D000104 ORTHO05D006397 7.9e-76 288.1 281 60.5
Lj2A45G39 Lonicera japonica HOM05D000104 ORTHO05D006397 1.0e-75 287.7 228 66.2
PSO764G0152 Papaver somniferum HOM05D000104 ORTHO05D006397 1.0e-75 287.7 283 57.6
Solyc04g050160.4 Solanum lycopersicum HOM05D000104 ORTHO05D006397 3.9e-75 285.8 248 62.5
Carub.0001s0796 Capsella rubella HOM05D000104 ORTHO05D006397 5.1e-75 285.4 230 63.5
CDE02G4509 Ceratophyllum demersum HOM05D000104 ORTHO05D006397 1.1e-74 284.3 296 56.1
ATR0787G043 Amborella trichopoda HOM05D000104 ORTHO05D006397 1.5e-74 283.9 268 57.8
Migut.F02058 Erythranthe guttata HOM05D000104 ORTHO05D006397 2.5e-74 283.1 237 63.7
BolC8t52520H Brassica oleracea HOM05D000104 ORTHO05D006397 7.4e-74 281.6 283 55.1
MSTRG.27435 Avicennia marina HOM05D000104 ORTHO05D006397 2.1e-73 280.0 284 56.7
SalBow1G3403 Salvia bowleyana HOM05D000104 ORTHO05D006397 4.8e-73 278.9 237 61.6
DCAR_028378 Daucus carota HOM05D000104 ORTHO05D006397 2.4e-72 276.6 242 62.0
C08p49920 Brassica napus HOM05D000104 ORTHO05D006397 3.1e-72 276.2 280 54.3
AUR62006982 Chenopodium quinoa HOM05D000104 ORTHO05D006397 3.1e-72 276.2 270 58.5
BraA09t41927Z Brassica rapa HOM05D000104 ORTHO05D006397 6.9e-72 275.0 263 57.4
Haze_04401 Corylus avellana HOM05D000104 ORTHO05D006397 6.9e-72 275.0 203 70.0
A09p65830 Brassica napus HOM05D000104 ORTHO05D006397 1.7e-70 270.4 263 57.4
SGA_v2.0_scaffold62G21465 Striga asiatica HOM05D000104 ORTHO05D006397 1.6e-68 263.8 280 54.3
HPP92_015192 Vanilla planifolia HOM05D000104 ORTHO05D006397 1.6e-68 263.8 289 52.2
Nitab4.5_0000061g0050 Nicotiana tabacum HOM05D000104 ORTHO05D006397 2.1e-68 263.5 235 60.9
Cc09_g02930 Coffea canephora HOM05D000104 ORTHO05D006397 1.3e-67 260.8 291 54.0
Hund07179 Selenicereus undatus HOM05D000104 ORTHO05D006397 6.7e-67 258.5 282 52.8
unitig_37.g12285 Utricularia gibba HOM05D000104 ORTHO05D006397 1.5e-66 257.3 227 58.6
Peaxi162Scf00373g01416 Petunia axillaris HOM05D000104 ORTHO05D006397 4.3e-66 255.8 226 60.6
Nitab4.5_0002088g0030 Nicotiana tabacum HOM05D000104 ORTHO05D006397 3.8e-62 242.7 214 61.2
FAN14G4089 Fragaria x ananassa HOM05D000104 ORTHO05D006397 4.6e-60 235.7 173 68.8
Migut.F01812 Erythranthe guttata HOM05D000104 ORTHO05D006397 2.3e-59 233.4 220 58.2
Os10g0457700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006397 5.1e-59 232.3 264 50.8
CAN.G29.15 Capsicum annuum HOM05D000104 ORTHO05D006397 3.3e-58 229.6 240 54.2
BcaC07g41936 Brassica carinata HOM05D000104 ORTHO05D006397 3.7e-57 226.1 239 53.1
SEGI_02699 Sequoiadendron giganteum HOM05D000104 ORTHO05D006397 5.3e-56 222.2 281 49.1
SHI15632 Sapria himalayana HOM05D000104 ORTHO05D006397 1.6e-52 210.7 248 51.2
Actinidia38931 Actinidia chinensis HOM05D000104 ORTHO05D006397 3.9e-51 206.1 150 67.3
Zm00001eb046650 Zea mays HOM05D000104 ORTHO05D006397 7.4e-50 201.8 284 44.4
Cpa.g.sc51.11 Carica papaya HOM05D000104 ORTHO05D006397 1.1e-48 198.0 149 64.4
SMO115G0122 Selaginella moellendorffii HOM05D000104 ORTHO05D006397 5.3e-48 195.7 232 47.0
Mapoly0058s0081 Marchantia polymorpha HOM05D000104 ORTHO05D006397 2.7e-44 183.3 234 44.9
CDE09G0961 Ceratophyllum demersum HOM05D000104 ORTHO05D006397 2.2e-41 173.7 161 62.1
Pp3c14_22150 Physcomitrium patens HOM05D000104 ORTHO05D006397 3.7e-41 172.9 280 40.4
SMO340G0266 Selaginella moellendorffii HOM05D000104 ORTHO05D006397 2.5e-37 160.2 231 41.1
SMO240G0025 Selaginella moellendorffii HOM05D059233 ORTHO05D006397 5.2e-35 152.5 220 43.2
AagrBONN_evm.TU.Sc2ySwM_344.2543 Anthoceros agrestis HOM05D000104 ORTHO05D006397 7.5e-34 148.7 277 34.3
AagrBONN_evm.TU.Sc2ySwM_368.1354 Anthoceros agrestis HOM05D002647 ORTHO05D002935 2.8e-28 130.2 234 38.0
AagrBONN_evm.TU.Sc2ySwM_368.1355 Anthoceros agrestis HOM05D000104 ORTHO05D006397 2.3e-27 127.1 280 35.7
CBR_g50040 Chara braunii HOM05D000104 ORTHO05D006397 2.6e-26 123.6 235 35.7
SalBow4G2470 Salvia bowleyana HOM05D017717 ORTHO05D006397 6.8e-11 72.4 53 62.3
Lsat_1_v5_gn_2_50481 Lactuca sativa HOM05D000894 ORTHO05D002325 1.1e-08 65.1 62 51.6


User provided reference genes

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