Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1703.3 898 100.0
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1555.0 898 90.5
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1550.0 898 90.4
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1334.7 822 82.2
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1332.8 885 76.4
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1328.2 811 82.7
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1315.4 820 83.0
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1314.3 857 80.2
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1313.9 838 81.0
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1309.3 816 82.0
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1307.0 816 81.9
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1304.7 910 77.3
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1303.9 816 81.6
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1303.9 819 80.2
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1298.1 874 78.7
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1297.3 854 78.7
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1293.5 816 80.4
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1292.3 936 75.5
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1292.3 852 76.6
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1291.2 855 77.5
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1289.6 892 77.2
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1288.9 939 75.4
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1287.7 946 75.1
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1286.6 888 76.7
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1285.8 872 76.9
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1285.4 886 76.6
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1284.6 837 78.4
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1284.2 874 77.2
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1283.9 909 76.3
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1283.5 912 76.3
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1282.3 861 77.5
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1281.9 886 76.9
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1281.9 874 76.7
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1281.2 858 76.0
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1278.8 823 78.7
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1278.1 892 74.2
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1277.7 874 75.4
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1276.9 820 81.1
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1274.2 862 77.0
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1273.8 881 75.4
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1273.8 875 77.6
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1272.3 874 75.2
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1272.3 854 77.8
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1268.8 875 76.3
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1265.8 873 76.1
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1265.8 879 75.0
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1264.6 874 75.6
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1264.6 876 75.8
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1264.2 869 75.6
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1264.2 860 74.8
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1263.4 887 73.8
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1263.1 878 74.8
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1263.1 869 75.5
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1261.1 824 76.0
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1261.1 907 74.6
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1259.6 853 76.7
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1258.8 864 77.2
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1256.9 849 76.4
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1246.9 812 79.2
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1243.4 883 74.4
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1243.4 854 77.3
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1239.2 863 77.2
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1236.1 866 73.6
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1234.2 876 74.2
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1224.5 906 71.6
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1221.5 881 73.7
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1220.7 875 71.1
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1212.6 851 77.0
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1199.9 873 71.8
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1174.5 860 70.5
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1172.9 872 73.1
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1172.9 857 70.0
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1172.9 875 68.3
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1171.0 829 73.8
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1160.2 814 74.0
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 0.0e+00 1151.7 819 71.6
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1150.6 860 70.7
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 0.0e+00 1150.6 876 70.4
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 0.0e+00 1147.9 833 72.6
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 0.0e+00 1147.1 803 70.7
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 0.0e+00 1137.5 831 70.8
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 0.0e+00 1117.8 824 70.5
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1111.3 784 73.6
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1111.3 784 73.6
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 1.4e-282 976.5 864 63.4
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 3.4e-260 902.1 615 76.4
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 4.3e-255 885.2 523 90.8
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 2.1e-254 882.9 839 55.1
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 1.7e-248 863.2 625 73.8
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 8.6e-248 860.9 552 78.8
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 5.2e-245 851.7 472 86.7
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 6.6e-240 834.7 811 55.2
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 9.3e-234 814.3 495 79.8
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 3.6e-222 775.8 813 51.7
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.2e-219 766.5 519 75.7
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 1.7e-195 687.2 832 45.0
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.9e-194 683.7 479 75.6
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 2.5e-194 683.3 814 47.9
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 9.7e-191 671.4 576 66.7
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.9e-170 604.0 461 72.7
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 8.6e-155 552.0 411 70.6
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 5.4e-149 532.7 848 36.6
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 1.2e-135 488.4 359 73.5
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.9e-123 446.8 251 90.0
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 4.5e-103 380.2 277 73.3
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 3.9e-99 367.1 201 86.6
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 4.3e-98 363.6 294 73.8
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 4.3e-98 363.6 209 85.6
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 1.2e-92 345.5 254 71.7
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.9e-90 338.2 227 71.8
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 3.7e-89 334.0 207 80.7
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 2.2e-86 324.7 226 72.6
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.4e-85 322.0 225 71.1
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 3.9e-83 313.9 194 77.8
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 3.2e-53 214.5 130 76.2
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 8.0e-52 209.9 170 64.7
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.4e-50 204.5 111 89.2
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 9.8e-50 203.0 128 75.0
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 2.4e-48 198.4 124 77.4
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 4.5e-47 194.1 119 79.8
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 4.3e-37 161.0 102 80.4
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 4.3e-37 161.0 197 49.2
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 1.8e-35 155.6 94 85.1
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 6.8e-35 153.7 87 83.9
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 5.4e-24 117.5 167 41.9
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.3e-21 107.8 82 70.7
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.6e-20 105.9 88 59.1
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 9.9e-18 96.7 69 66.7
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.7e-17 95.9 64 71.9
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 8.3e-17 93.6 73 64.4
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.1e-16 93.2 72 66.7
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.1e-16 93.2 72 66.7
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 4.1e-16 91.3 59 79.7
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 9.2e-16 90.1 53 84.9
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 3.0e-14 85.1 54 74.1
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 8.1e-12 77.0 71 66.2
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 6.4e-09 67.4 232 25.0
FvH4_6g01352 Fragaria vesca HOM05D002281 ORTHO05D006774 6.4e-09 67.4 101 53.5
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 8.4e-09 67.0 104 48.1
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 8.4e-09 67.0 200 27.0
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 1.1e-08 66.6 49 69.4
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 1.1e-08 66.6 73 50.7
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 1.9e-08 65.9 42 73.8
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 1.6e-07 62.8 218 24.8
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 2.7e-07 62.0 256 25.8


User provided reference genes

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