Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 1.3e-103 379.8 203 100.0
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 6.1e-93 344.4 203 89.7
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 6.3e-90 334.3 203 87.7
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.1e-89 333.6 201 88.6
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 9.8e-75 283.9 203 75.4
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 3.7e-74 282.0 203 75.4
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 3.7e-74 282.0 203 75.4
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 8.3e-74 280.8 203 74.9
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 2.4e-73 279.3 203 76.8
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 7.1e-73 277.7 203 75.9
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 7.8e-72 274.2 203 73.4
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 7.8e-72 274.2 203 73.4
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 3.9e-71 271.9 203 73.4
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 3.9e-71 271.9 201 73.1
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 5.1e-71 271.6 203 73.9
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 5.1e-71 271.6 203 73.9
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.5e-70 270.0 203 72.9
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 9.5e-70 267.3 203 70.9
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 6.2e-69 264.6 196 74.5
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 6.8e-68 261.2 196 73.5
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.3e-66 256.9 205 71.2
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.2e-66 256.1 205 71.7
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 4.9e-66 255.0 203 66.5
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 4.1e-65 251.9 203 71.4
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 5.4e-65 251.5 209 71.3
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 7.1e-65 251.1 194 70.1
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 7.1e-65 251.1 202 72.8
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 9.2e-65 250.8 205 70.7
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 9.2e-65 250.8 207 69.6
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 2.1e-64 249.6 203 71.4
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 3.5e-64 248.8 202 71.8
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 6.0e-64 248.1 208 69.2
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 7.8e-64 247.7 206 69.4
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 2.3e-63 246.1 196 69.9
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 2.3e-63 246.1 202 70.8
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 2.3e-63 246.1 203 70.4
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 3.0e-63 245.7 203 70.4
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 5.1e-63 245.0 204 69.6
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 6.6e-63 244.6 206 69.9
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 1.1e-62 243.8 205 67.8
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.1e-62 243.8 207 69.6
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 2.5e-62 242.7 210 69.0
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 2.5e-62 242.7 204 66.2
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 3.3e-62 242.3 197 68.5
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 3.3e-62 242.3 195 69.7
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 3.3e-62 242.3 199 71.4
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 7.3e-62 241.1 209 67.5
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 9.6e-62 240.7 208 68.3
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 2.1e-61 239.6 204 69.6
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.8e-60 236.5 205 64.9
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 2.0e-59 233.0 204 65.7
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 2.0e-59 233.0 207 66.7
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 3.4e-59 232.3 207 66.7
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 4.9e-58 228.4 204 66.7
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 6.4e-58 228.0 169 72.8
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 1.9e-57 226.5 211 65.9
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 3.2e-57 225.7 211 65.4
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 4.2e-57 225.3 214 62.6
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 5.4e-57 224.9 207 64.7
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 9.3e-57 224.2 207 63.3
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.6e-56 223.4 208 64.9
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 2.7e-56 222.6 201 61.7
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 2.7e-56 222.6 203 65.0
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 3.5e-56 222.2 207 62.8
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.3e-55 220.3 207 64.3
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 1.3e-55 220.3 211 64.0
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 1.7e-55 219.9 208 63.9
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.7e-55 219.9 208 63.9
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 1.7e-55 219.9 202 63.4
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 1.7e-55 219.9 201 64.2
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.3e-55 219.5 207 64.3
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 2.3e-55 219.5 213 62.4
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 5.1e-55 218.4 206 63.1
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 6.6e-55 218.0 207 63.3
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 6.6e-55 218.0 207 63.3
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.1e-54 217.2 204 63.7
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 1.9e-54 216.5 215 65.1
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.9e-54 216.5 200 65.0
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 5.6e-54 214.9 203 62.1
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 7.3e-54 214.5 213 60.6
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 1.6e-53 213.4 204 63.7
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 2.8e-53 212.6 215 59.1
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 1.8e-52 209.9 206 62.1
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 1.8e-52 209.9 202 64.4
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 2.0e-51 206.5 202 61.9
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 2.0e-51 206.5 205 63.4
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 2.0e-51 206.5 204 61.8
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 2.6e-51 206.1 209 62.2
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 2.9e-50 202.6 198 61.6
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 2.9e-50 202.6 204 60.3
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 3.8e-50 202.2 204 60.3
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 6.4e-50 201.4 209 59.8
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 6.4e-50 201.4 214 59.8
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 6.4e-50 201.4 214 59.8
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 8.4e-50 201.1 204 62.3
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 1.4e-49 200.3 205 60.5
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 2.4e-49 199.5 204 60.3
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 3.2e-49 199.1 206 59.7
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 5.4e-49 198.4 208 59.6
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 5.4e-49 198.4 208 59.6
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 7.1e-49 198.0 218 59.2
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 7.1e-49 198.0 215 59.1
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 9.3e-49 197.6 206 59.2
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 1.2e-48 197.2 208 59.1
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 2.1e-48 196.4 209 59.8
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 3.5e-48 195.7 213 59.2
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 4.6e-48 195.3 210 58.6
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 7.9e-48 194.5 202 59.4
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 1.3e-47 193.7 196 60.2
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 1.7e-47 193.4 216 58.3
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 1.7e-47 193.4 216 58.3
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 3.0e-47 192.6 213 58.2
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 3.0e-47 192.6 213 58.2
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 3.0e-47 192.6 213 58.2
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 1.5e-46 190.3 195 57.4
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 3.3e-46 189.1 214 55.6
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 5.6e-46 188.3 213 57.3
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 2.1e-45 186.4 206 55.3
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 2.8e-45 186.0 211 55.9
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 3.6e-45 185.7 202 57.4
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 4.8e-45 185.3 212 55.2
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 4.8e-45 185.3 210 53.8
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 6.2e-45 184.9 166 66.3
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 8.1e-45 184.5 207 57.0
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 1.1e-44 184.1 212 55.2
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 1.1e-44 184.1 212 54.7
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 1.2e-43 180.6 210 53.8
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.3e-42 177.2 205 53.7
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 1.7e-42 176.8 205 58.5
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 1.8e-39 166.8 202 52.0
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 6.7e-39 164.9 201 49.8
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.1e-38 164.1 180 55.0
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 1.6e-37 160.2 156 57.7
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 1.4e-36 157.1 205 49.8
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 4.0e-36 155.6 139 61.9
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 9.0e-36 154.5 205 49.8
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 2.0e-35 153.3 205 48.8
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 4.9e-34 148.7 115 67.8
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 2.3e-31 139.8 123 65.9
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 3.0e-31 139.4 176 48.9
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 1.9e-30 136.7 181 54.1
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.8e-29 132.9 141 52.5
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.8e-29 132.9 170 47.6
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 1.1e-28 131.0 139 52.5
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 5.3e-28 128.6 211 39.8
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 1.4e-25 120.6 131 55.7
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 3.2e-25 119.4 160 48.1
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 7.9e-24 114.8 133 52.6
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 9.7e-22 107.8 157 51.6
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 4.8e-21 105.5 133 51.9
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 1.4e-20 104.0 160 45.0
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 9.0e-20 101.3 76 69.7
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.5e-19 100.5 133 47.4
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 2.6e-19 99.8 140 46.4
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.3e-18 97.4 191 39.8
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 3.2e-17 92.8 93 63.4
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.6e-16 90.5 103 51.5
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 6.1e-16 88.6 100 53.0
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 1.0e-15 87.8 121 45.5
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 3.2e-09 66.2 116 37.9


User provided reference genes

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