Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 0.0e+00 1162.9 594 100.0
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 0.0e+00 1102.8 595 94.5
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 0.0e+00 1094.3 595 93.4
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 0.0e+00 1085.1 595 93.3
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 0.0e+00 1083.6 595 92.4
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 2.4e-286 988.4 592 84.3
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 5.5e-283 977.2 590 83.6
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 3.9e-281 971.1 616 80.4
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 6.3e-279 963.8 592 82.4
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 8.2e-279 963.4 594 81.6
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.8e-278 962.2 595 82.4
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 9.0e-278 959.9 592 81.6
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 4.5e-277 957.6 591 80.7
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 4.5e-277 957.6 609 80.3
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 5.8e-277 957.2 591 81.7
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.9e-276 954.9 601 81.0
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 3.8e-276 954.5 592 80.4
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.1e-275 953.0 595 80.3
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 3.0e-273 944.9 596 79.7
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 4.3e-272 941.0 592 80.4
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.2e-271 938.7 595 80.3
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 3.7e-271 937.9 566 82.5
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.1e-270 936.4 594 79.1
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 6.9e-270 933.7 596 79.5
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 9.0e-270 933.3 595 79.5
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.5e-269 932.6 595 78.8
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 2.0e-269 932.2 594 79.5
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.0e-268 929.9 595 79.5
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 3.8e-268 927.9 595 79.5
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.1e-267 926.4 591 79.2
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.5e-267 925.2 594 78.6
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 4.2e-267 924.5 593 79.4
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 4.2e-267 924.5 591 79.4
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.1e-266 922.2 592 78.4
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 7.9e-266 920.2 594 79.3
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.0e-265 919.8 593 78.4
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.5e-264 916.0 593 78.1
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 7.4e-264 913.7 591 78.0
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 7.4e-264 913.7 592 78.4
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.3e-263 912.9 640 73.9
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.8e-262 909.1 614 77.0
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.8e-262 909.1 592 77.9
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 3.1e-262 908.3 593 78.4
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 3.1e-262 908.3 593 77.1
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 4.1e-262 907.9 594 77.6
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 5.3e-262 907.5 606 76.4
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.2e-261 906.4 592 77.7
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 5.9e-261 904.0 596 76.3
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.0e-260 903.3 594 77.3
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.0e-260 903.3 596 77.3
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 2.2e-260 902.1 599 76.6
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 2.2e-260 902.1 599 76.6
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 2.2e-260 902.1 599 76.1
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.0e-260 901.0 597 77.2
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 8.5e-260 900.2 598 75.8
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 2.5e-259 898.7 596 75.5
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.5e-259 898.7 596 77.2
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 3.2e-259 898.3 599 76.0
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 3.6e-258 894.8 596 75.0
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 3.6e-258 894.8 596 75.0
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 3.6e-258 894.8 596 75.0
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 4.7e-258 894.4 596 75.0
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 4.7e-258 894.4 598 75.9
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 7.9e-258 893.6 589 77.9
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.0e-257 893.3 596 74.8
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 1.0e-257 893.3 596 76.2
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.0e-257 893.3 595 77.0
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.4e-257 892.9 595 76.8
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.8e-257 892.5 598 75.4
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 3.0e-257 891.7 596 75.3
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 3.0e-257 891.7 599 75.6
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 3.9e-257 891.3 596 76.8
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 3.9e-257 891.3 651 71.6
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 5.1e-257 891.0 590 75.6
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 6.7e-257 890.6 594 75.4
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 8.8e-257 890.2 599 75.6
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.1e-256 889.8 598 75.8
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 1.5e-256 889.4 600 76.8
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 4.4e-256 887.9 595 76.0
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 4.4e-256 887.9 594 75.6
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 7.4e-256 887.1 594 75.1
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 1.3e-255 886.3 614 73.8
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 3.7e-255 884.8 596 74.7
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 4.8e-255 884.4 599 75.3
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 8.2e-255 883.6 595 76.3
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 2.4e-254 882.1 675 69.2
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 9.1e-254 880.2 596 74.7
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.0e-252 876.7 592 75.0
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 6.5e-252 874.0 589 75.2
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.1e-251 873.2 595 74.3
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.2e-251 871.7 591 76.3
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 8.0e-250 867.1 594 74.1
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 8.8e-249 863.6 592 72.3
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.6e-248 862.1 551 79.1
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.7e-247 859.4 564 77.5
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.1e-246 856.7 616 71.8
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.8e-246 855.9 564 78.5
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 1.0e-244 850.1 548 79.4
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 5.5e-243 844.3 597 74.9
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 3.6e-242 841.6 556 76.4
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 4.7e-242 841.3 593 72.7
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.0e-241 840.1 593 72.5
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 1.7e-239 832.8 550 76.9
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.6e-234 816.2 585 73.2
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 8.0e-234 813.9 611 69.1
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 7.5e-232 807.4 585 72.3
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 1.7e-228 796.2 635 66.6
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.4e-222 776.5 648 62.8
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 4.1e-222 775.0 593 68.5
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.1e-219 766.9 502 77.1
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.6e-218 763.1 469 81.9
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 1.2e-216 756.9 598 64.5
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.7e-215 753.1 596 65.3
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 3.7e-215 751.9 496 77.4
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.6e-213 746.5 594 64.8
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.6e-210 736.5 471 77.9
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 9.6e-195 684.1 544 67.6
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.6e-189 666.8 423 78.7
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.3e-183 647.1 503 67.8
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 9.6e-179 630.9 440 74.1
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.4e-174 616.3 596 53.5
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 9.6e-171 604.4 598 53.2
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 1.3e-167 594.0 585 52.3
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 1.1e-155 554.3 437 64.5
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 6.3e-146 521.9 366 73.8
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 2.4e-145 520.0 320 81.9
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 4.1e-145 519.2 605 46.4
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.1e-134 484.6 577 45.9
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 3.0e-132 476.5 418 59.1
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 6.5e-127 458.8 521 51.4
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.2e-124 449.1 281 80.8
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 6.8e-124 448.7 334 70.7
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.2e-114 417.2 242 82.2
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 2.9e-106 390.2 280 73.6
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 2.5e-102 377.1 435 49.4
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.3e-90 338.2 316 59.5
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 5.6e-86 322.8 276 62.0
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.6e-77 293.5 678 31.7
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 9.3e-73 278.9 178 77.5
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 9.6e-70 268.9 538 33.8
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 1.3e-61 241.9 140 85.7
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 1.6e-61 241.5 149 78.5
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 1.4e-60 238.4 145 82.8
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.9e-46 191.4 149 68.5
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 1.1e-44 185.7 612 27.5
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.4e-44 184.5 163 62.6
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.5e-34 149.8 96 76.0
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 8.8e-31 139.4 120 55.8
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.8e-28 131.7 97 67.0
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 5.3e-28 130.2 185 38.9
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 4.2e-25 120.6 70 80.0
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.2e-24 119.0 97 57.7
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.4e-23 115.5 66 81.8
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 2.2e-21 108.2 68 70.6
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 8.5e-18 96.3 78 57.7
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 2.1e-16 91.7 49 87.8
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 2.7e-16 91.3 635 22.5
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 1.0e-15 89.4 48 87.5
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 5.7e-14 83.6 71 53.5
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.3e-13 82.4 93 48.4
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 5.3e-12 77.0 209 30.6
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 4.2e-09 67.4 46 71.7
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 4.2e-09 67.4 46 71.7
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 2.7e-08 64.7 53 62.3
Os08g0323266 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D026010 1.2e-06 59.3 46 65.2


User provided reference genes

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