Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.6e-188 662.5 324 100.0
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 7.9e-159 563.9 320 84.7
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 6.1e-127 458.0 325 68.3
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.8e-123 446.4 323 67.2
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 7.0e-123 444.5 306 68.0
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.2e-122 443.7 306 68.0
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.6e-122 442.6 306 67.3
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 3.5e-122 442.2 328 64.0
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 1.0e-121 440.7 317 66.9
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 2.2e-121 439.5 315 67.0
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 2.9e-121 439.1 321 66.7
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.4e-120 436.8 308 67.2
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 2.5e-120 436.0 298 67.4
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 3.2e-120 435.6 323 65.9
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 7.2e-120 434.5 329 63.2
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 7.2e-120 434.5 284 70.8
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 7.2e-120 434.5 306 67.3
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.1e-119 433.0 329 62.9
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.1e-117 427.2 303 68.3
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 9.7e-117 424.1 326 62.6
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 3.7e-116 422.2 325 62.5
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 2.6e-114 416.0 333 62.8
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 4.5e-114 415.2 330 61.2
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 5.9e-114 414.8 284 67.3
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 3.8e-113 412.1 303 66.0
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 8.5e-113 411.0 320 63.8
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.5e-112 410.2 324 63.0
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 2.5e-112 409.5 304 62.8
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 3.2e-112 409.1 288 65.3
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 9.4e-112 407.5 320 62.2
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.2e-111 407.1 312 63.1
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.2e-111 407.1 286 66.4
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.6e-111 406.8 294 64.6
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 2.1e-111 406.4 301 64.8
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 2.1e-111 406.4 352 58.0
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 4.7e-111 405.2 288 64.6
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 6.1e-111 404.8 324 61.4
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 6.1e-111 404.8 334 59.0
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 8.0e-111 404.4 298 65.1
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 2.3e-110 402.9 298 65.4
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 2.3e-110 402.9 288 64.9
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 4.0e-110 402.1 305 62.3
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 4.0e-110 402.1 300 65.0
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 8.8e-110 401.0 310 62.6
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 1.2e-109 400.6 572 43.2
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 2.6e-109 399.4 309 62.1
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 5.7e-109 398.3 308 60.4
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.2e-108 396.4 284 66.2
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.2e-108 396.4 285 63.5
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 3.7e-108 395.6 317 59.3
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 4.8e-108 395.2 298 63.8
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 6.3e-108 394.8 322 62.1
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 8.3e-108 394.4 319 60.2
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 7.0e-107 391.3 283 70.3
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 2.7e-106 389.4 302 60.3
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 2.2e-105 386.3 300 59.0
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 5.0e-105 385.2 305 59.3
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 6.5e-105 384.8 300 59.3
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.1e-104 384.0 248 71.8
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.5e-104 383.6 294 60.9
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.5e-104 383.6 300 59.0
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 2.5e-104 382.9 302 57.9
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 2.5e-104 382.9 303 60.1
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.5e-104 382.9 257 69.6
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.5e-104 382.9 295 62.4
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 4.2e-104 382.1 300 58.0
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 4.2e-104 382.1 306 58.5
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 5.5e-104 381.7 300 59.0
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 5.5e-104 381.7 312 61.2
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.6e-103 380.2 300 57.3
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 3.6e-103 379.0 251 70.1
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 4.7e-103 378.6 305 58.4
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 8.0e-103 377.9 308 58.1
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 1.0e-102 377.5 296 58.4
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.4e-102 377.1 298 58.4
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 4.4e-101 372.1 256 67.2
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 3.7e-100 369.0 251 67.7
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.2e-98 364.0 252 66.7
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 3.8e-97 359.0 250 67.2
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 8.6e-97 357.8 250 67.6
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 3.6e-95 352.4 284 57.7
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 3.6e-95 352.4 287 59.6
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.8e-94 350.1 280 58.2
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 2.3e-94 349.7 229 68.1
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 5.2e-94 348.6 308 57.5
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.8e-94 348.2 321 57.0
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 1.2e-93 347.4 276 58.7
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 2.0e-93 346.7 303 57.1
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 1.3e-92 344.0 261 63.2
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.8e-91 340.1 293 55.6
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 3.5e-90 335.9 296 53.7
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 6.6e-89 331.6 318 53.8
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 7.3e-88 328.2 225 69.3
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 3.4e-85 319.3 249 64.3
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 5.4e-83 312.0 295 53.9
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 3.5e-82 309.3 293 53.2
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.8e-79 299.7 189 72.5
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 3.7e-76 289.3 195 68.7
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 2.1e-74 283.5 279 47.3
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.1e-74 283.5 188 67.6
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.0e-74 282.0 330 48.8
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 4.9e-68 262.3 278 45.0
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 7.1e-67 258.5 163 70.6
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 1.3e-65 254.2 256 46.9
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 6.6e-65 251.9 278 45.0
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 6.6e-65 251.9 154 71.4
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 1.9e-59 233.8 235 51.9
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 5.4e-59 232.3 153 66.7
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.5e-56 223.4 183 59.6
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 6.2e-55 218.8 148 67.6
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.1e-51 208.0 244 48.4
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 4.2e-51 206.1 244 47.1
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.3e-49 201.1 166 60.8
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.2e-42 177.9 132 64.4
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.8e-41 174.1 232 44.0
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 2.3e-41 173.7 216 36.1
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 5.6e-40 169.1 200 46.0
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 7.4e-40 168.7 113 64.6
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 1.4e-38 164.5 127 55.1
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.2e-37 161.4 148 54.7
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 6.5e-36 155.6 287 34.1
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 9.3e-35 151.8 127 59.1
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.3e-33 147.9 146 57.5
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 6.7e-33 145.6 132 55.3
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.0e-28 131.7 78 73.1
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 6.5e-28 129.0 102 61.8
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 1.2e-26 124.8 100 60.0
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 3.2e-19 100.1 76 57.9
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 5.5e-19 99.4 163 40.5
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 3.3e-16 90.1 73 63.0
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.1e-14 85.1 110 47.3
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.8e-14 84.3 67 61.2
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.2e-11 73.6 85 43.5
AL1G44350 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 3.1e-06 57.0 44 61.4
Haze_25177 Corylus avellana HOM05D005815 ORTHO05D007023 9.1e-06 55.5 41 63.4


User provided reference genes

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