Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 0.0e+00 1191.4 647 100.0
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 2.8e-309 1064.7 661 86.7
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 1.2e-299 1032.7 661 84.6
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 2.7e-251 872.1 662 74.5
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 1.4e-247 859.8 667 73.5
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 1.2e-246 856.7 660 73.6
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 2.0e-246 855.9 661 73.5
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 2.6e-246 855.5 660 73.3
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 7.6e-246 854.0 663 74.4
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 3.8e-245 851.7 664 74.4
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 1.1e-244 850.1 660 72.6
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.4e-244 849.7 658 73.6
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 9.3e-244 847.0 659 71.6
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.3e-242 843.2 661 72.6
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 3.0e-242 842.0 664 73.9
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 3.0e-242 842.0 662 73.0
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 6.7e-242 840.9 661 72.5
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 8.7e-242 840.5 657 72.3
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 2.5e-241 839.0 663 73.8
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 7.4e-241 837.4 665 73.1
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 7.4e-241 837.4 660 71.7
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.3e-240 836.6 662 72.4
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 2.1e-240 835.9 663 73.3
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.4e-239 833.2 658 72.8
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 3.1e-239 832.0 661 72.3
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 9.9e-238 827.0 659 70.9
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 6.4e-237 824.3 659 72.4
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 1.4e-236 823.2 665 72.2
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-236 823.2 663 71.6
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.1e-235 819.3 663 71.5
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 3.5e-235 818.5 659 71.8
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.0e-234 815.5 663 71.0
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 1.3e-232 810.1 663 70.7
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.8e-232 808.9 666 70.4
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 9.0e-231 803.9 662 71.8
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 9.0e-231 803.9 662 71.8
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 1.0e-229 800.4 660 68.3
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 4.9e-229 798.1 659 70.4
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.4e-229 797.3 663 70.4
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 1.4e-228 796.6 659 67.5
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 1.9e-228 796.2 659 70.1
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 2.1e-227 792.7 663 69.5
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 1.3e-226 790.0 665 70.1
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 1.9e-225 786.2 656 67.8
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 4.3e-225 785.0 667 68.8
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 2.2e-224 782.7 658 70.4
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 3.4e-222 775.4 672 66.7
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 2.9e-221 772.3 654 69.4
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.0e-218 763.8 639 67.9
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 2.5e-217 759.2 663 69.2
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 9.7e-217 757.3 676 68.2
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 2.8e-216 755.7 662 65.9
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 2.4e-215 752.7 655 67.3
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 4.5e-214 748.4 658 67.2
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 1.0e-213 747.3 655 67.5
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 2.5e-212 742.7 655 67.2
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 4.2e-212 741.9 665 65.3
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 3.9e-210 735.3 653 67.2
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.1e-209 733.8 666 65.9
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.2e-206 723.8 668 62.7
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.5e-206 723.4 670 66.0
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 4.5e-206 721.8 670 66.1
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 8.5e-205 717.6 651 65.6
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 1.1e-204 717.2 659 64.2
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 6.7e-202 708.0 653 63.6
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 8.8e-202 707.6 661 63.5
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 7.4e-201 704.5 664 61.9
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 9.7e-201 704.1 663 62.6
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 9.7e-201 704.1 664 64.5
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 1.7e-200 703.4 660 62.6
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.4e-199 700.3 661 62.3
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.4e-199 700.3 657 63.3
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.4e-199 700.3 661 62.3
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 2.0e-198 696.4 664 63.6
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 4.5e-198 695.3 668 61.8
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 5.9e-198 694.9 648 62.2
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.3e-197 693.7 654 61.5
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.3e-197 693.7 657 62.3
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 1.7e-197 693.3 661 62.5
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.9e-196 689.9 617 67.6
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 2.5e-196 689.5 658 62.0
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 7.2e-196 688.0 664 60.8
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.2e-195 687.2 653 61.9
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.7e-195 685.3 663 61.5
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 4.7e-195 685.3 655 61.7
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 6.1e-195 684.9 655 61.5
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-194 683.7 664 60.5
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 2.3e-194 682.9 660 60.9
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 8.8e-194 681.0 657 60.3
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.5e-193 680.2 673 60.2
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 7.5e-193 677.9 653 64.9
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 9.7e-193 677.6 663 61.4
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 1.7e-192 676.8 666 61.6
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.8e-192 676.0 664 60.1
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.2e-192 674.5 664 59.6
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 7.0e-191 671.4 667 60.3
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 1.6e-190 670.2 658 61.4
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 4.5e-190 668.7 656 63.1
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.3e-189 667.2 667 58.3
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 3.8e-189 665.6 608 63.2
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 5.5e-188 661.8 663 59.1
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 4.7e-187 658.7 667 61.9
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 6.1e-187 658.3 652 60.9
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 8.0e-187 657.9 656 60.2
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.8e-186 656.8 652 60.9
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 2.0e-185 653.3 657 58.1
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 4.4e-185 652.1 666 59.8
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 7.5e-185 651.4 547 69.3
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 7.5e-185 651.4 547 69.3
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.0e-182 643.3 651 61.1
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 3.8e-181 639.0 540 68.5
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 5.5e-180 635.2 653 62.8
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 5.5e-180 635.2 657 58.9
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.6e-179 633.6 663 57.5
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.6e-179 633.6 659 57.5
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.0e-178 630.9 659 55.1
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.4e-178 630.6 658 58.1
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.6e-177 626.3 675 57.5
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 5.7e-177 625.2 660 58.9
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 3.7e-176 622.5 663 56.0
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 1.6e-174 617.1 653 58.5
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 2.7e-174 616.3 657 57.2
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.3e-173 614.0 669 55.5
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 6.6e-173 611.7 650 57.4
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.5e-172 610.5 669 54.4
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.9e-172 610.1 667 59.5
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 5.6e-172 608.6 673 56.3
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.8e-170 603.6 663 57.0
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 2.3e-170 603.2 655 57.9
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.7e-168 597.0 664 56.0
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.2e-168 596.7 655 55.0
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 2.0e-166 590.1 652 54.1
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 1.1e-162 577.8 674 53.3
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 6.8e-162 575.1 669 55.8
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 5.8e-161 572.0 673 54.5
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 5.4e-159 565.5 659 52.2
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.7e-158 563.1 643 55.4
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 7.8e-158 561.6 670 54.0
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 3.0e-157 559.7 652 53.4
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.3e-154 550.1 639 58.4
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 3.0e-149 533.1 666 52.3
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 6.2e-147 525.4 656 52.0
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 3.4e-145 519.6 401 72.8
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 5.8e-145 518.8 662 51.5
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 9.2e-143 511.5 669 50.1
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 2.7e-142 510.0 665 50.2
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.5e-140 504.2 620 52.4
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 9.6e-140 501.5 404 71.5
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 4.8e-139 499.2 541 55.5
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 1.5e-129 467.6 405 68.1
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 2.0e-129 467.2 430 64.9
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.1e-126 457.2 609 48.4
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 6.2e-123 445.7 665 44.8
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.4e-119 434.5 610 46.1
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 4.3e-116 422.9 661 46.6
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 2.8e-91 340.5 538 45.4
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.8e-90 337.8 670 40.9
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 3.9e-85 320.1 312 58.3
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.7e-83 314.7 539 42.1
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 4.8e-75 286.6 221 73.3
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 1.2e-70 271.9 645 38.0
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 3.0e-69 267.3 503 38.6
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 5.5e-63 246.5 645 34.0
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 2.5e-47 194.5 271 43.2
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.3e-45 188.0 224 58.0
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 3.5e-33 147.5 112 62.5
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 1.5e-31 142.1 126 68.3
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 2.9e-27 127.9 77 83.1
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.6e-25 120.6 106 57.5
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.1e-21 109.4 142 50.7
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.1e-21 109.4 90 66.7
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 9.9e-20 102.8 396 25.8
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 1.6e-17 95.5 471 24.2
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.1e-16 90.5 74 63.5
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 4.3e-15 87.4 397 26.2
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 5.6e-15 87.0 58 69.0
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.4e-12 77.8 78 56.4
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 3.4e-12 77.8 114 51.8
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 6.4e-11 73.6 60 60.0
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 3.3e-07 61.2 65 55.4
arahy.Tifrunner.gnm1.ann1.8T1JJH Arachis hypogaea HOM05D003743 ORTHO05D004311 7.4e-07 60.1 150 40.7
Lj8E171T0 Lonicera japonica HOM05D003743 ORTHO05D004311 7.4e-07 60.1 83 51.8


User provided reference genes

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