Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 1.9e-303 1045.0 531 100.0
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 1.9e-266 922.2 548 86.5
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 1.9e-242 842.4 553 81.4
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 1.7e-235 819.3 536 81.3
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 1.5e-231 806.2 548 79.7
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 4.4e-183 645.2 571 62.7
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.7e-182 643.3 571 62.3
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 2.2e-182 642.9 551 64.1
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 5.4e-181 638.3 559 62.4
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 7.8e-180 634.4 571 61.5
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.0e-179 634.0 561 62.4
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.0e-179 632.5 571 62.0
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 6.6e-179 631.3 562 63.2
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 6.6e-179 631.3 569 61.3
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 6.6e-179 631.3 564 62.1
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 3.3e-178 629.0 564 62.1
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.1e-176 622.5 599 59.3
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 5.8e-175 618.2 557 61.0
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 9.8e-175 617.5 560 60.9
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 3.7e-174 615.5 561 60.4
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.1e-173 614.0 582 59.8
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 2.4e-173 612.8 567 60.1
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 2.4e-173 612.8 564 61.2
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 4.1e-173 612.1 557 60.5
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 7.8e-172 607.8 564 59.8
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 1.3e-171 607.1 561 59.2
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 3.9e-171 605.5 574 59.2
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 5.0e-171 605.1 557 59.4
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 1.1e-170 604.0 571 60.1
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 1.8e-168 596.7 567 59.3
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 5.2e-168 595.1 560 59.6
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.2e-166 589.7 566 59.0
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 1.1e-165 587.4 573 58.6
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.9e-165 586.6 561 58.5
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 2.4e-165 586.3 558 57.9
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 1.6e-164 583.6 563 56.8
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 2.7e-164 582.8 573 56.2
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.3e-163 579.7 559 58.1
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 5.1e-163 578.6 540 58.9
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 6.6e-163 578.2 572 58.6
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 1.5e-162 577.0 561 57.9
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 1.9e-162 576.6 560 57.1
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 5.6e-162 575.1 561 58.3
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 2.8e-161 572.8 562 55.9
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 1.4e-160 570.5 595 54.8
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 2.3e-160 569.7 559 57.2
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 5.2e-160 568.5 581 57.5
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 2.6e-159 566.2 560 58.9
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 3.4e-159 565.8 559 57.2
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 4.4e-159 565.5 540 59.3
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 7.6e-159 564.7 565 56.6
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 2.2e-158 563.1 566 55.7
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.9e-158 562.8 613 54.3
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 7.1e-157 558.1 556 57.6
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 9.2e-157 557.8 571 55.2
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 2.1e-156 556.6 539 56.8
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.0e-156 555.1 548 58.0
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 6.0e-156 555.1 563 56.0
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 1.0e-155 554.3 563 55.8
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.0e-155 554.3 528 59.7
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 1.3e-155 553.9 477 63.1
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.3e-155 553.9 589 56.2
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 3.0e-155 552.7 563 56.0
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 3.9e-155 552.4 555 56.2
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 6.6e-155 551.6 563 55.6
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 1.5e-154 550.4 524 59.5
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 1.6e-153 547.0 562 55.2
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 2.1e-153 546.6 557 57.3
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 3.6e-153 545.8 554 54.5
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 3.6e-153 545.8 594 52.4
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 8.1e-153 544.7 544 55.7
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 1.1e-152 544.3 554 54.5
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.4e-152 543.9 561 55.6
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-152 543.1 563 55.2
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 3.1e-152 542.7 557 56.0
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 4.4e-151 538.9 554 54.2
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 5.8e-151 538.5 554 56.0
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 9.9e-151 537.7 560 54.5
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 2.2e-150 536.6 563 54.0
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.8e-150 535.8 584 54.6
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.9e-149 533.5 554 53.8
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 3.2e-149 532.7 522 56.7
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 7.1e-149 531.6 579 53.4
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 1.6e-148 530.4 554 54.2
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 2.1e-148 530.0 586 53.2
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 2.1e-148 530.0 556 55.2
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.7e-148 529.6 564 54.8
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 5.1e-147 525.4 444 61.0
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 1.1e-146 524.2 562 54.4
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 6.2e-145 518.5 552 54.2
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 8.1e-145 518.1 563 53.6
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 9.0e-144 514.6 548 55.8
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 2.6e-143 513.1 583 52.1
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.7e-139 500.4 570 54.6
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 1.1e-138 497.7 552 52.7
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 7.6e-135 485.0 568 50.9
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 2.2e-134 483.4 567 51.9
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 2.4e-133 479.9 579 51.1
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 1.8e-131 473.8 565 51.0
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.6e-130 468.0 479 56.6
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 7.6e-127 458.4 513 51.1
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 1.0e-126 458.0 563 49.2
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 6.5e-126 455.3 558 48.9
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 6.5e-126 455.3 564 49.3
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 4.6e-124 449.1 365 65.8
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 1.3e-123 447.6 551 50.8
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 3.7e-121 439.5 516 51.2
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.1e-120 436.4 557 49.9
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 3.2e-109 399.8 286 71.7
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 7.4e-106 388.7 395 57.2
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 9.7e-106 388.3 286 69.2
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 7.7e-103 378.6 546 42.7
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 1.9e-101 374.0 553 42.7
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 3.0e-99 366.7 288 66.3
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 7.4e-98 362.1 380 54.7
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 1.5e-93 347.8 286 63.6
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 6.5e-86 322.4 362 51.7
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 2.2e-73 280.8 599 34.7
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 2.5e-69 267.3 312 52.6
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.3e-69 265.8 256 58.6
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 3.7e-65 253.4 233 59.7
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.0e-63 247.7 225 60.0
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 1.4e-56 224.9 269 50.6
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.4e-56 224.2 227 55.9
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 3.5e-55 220.3 271 50.9
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 5.0e-54 216.5 607 31.1
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 8.6e-54 215.7 259 49.8
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-53 214.9 327 41.9
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 1.6e-52 211.5 275 49.1
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 1.4e-51 208.4 267 48.3
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 8.9e-51 205.7 278 47.1
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.3e-49 201.8 292 45.5
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.1e-48 198.7 279 47.7
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 9.2e-48 195.7 355 35.5
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 1.0e-46 192.2 264 44.7
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 4.7e-44 183.3 189 48.7
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 8.1e-44 182.6 143 67.8
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 1.2e-42 178.7 267 43.4
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 4.6e-39 166.8 586 27.6
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 5.6e-37 159.8 107 70.1
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.4e-34 150.2 196 45.4
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 9.3e-32 142.5 189 45.0
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.4e-27 127.9 163 49.7
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.5e-26 125.2 206 44.7
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.4e-24 118.6 80 70.0
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 4.2e-24 117.1 75 72.0
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.3e-22 112.1 149 49.7
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 3.9e-22 110.5 175 40.6
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-21 109.0 176 41.5
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 3.3e-21 107.5 223 34.5
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 4.3e-21 107.1 99 53.5
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 5.6e-21 106.7 58 86.2
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.8e-20 104.4 158 44.9
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 2.4e-19 101.3 57 84.2
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 5.8e-18 96.7 77 62.3
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 9.9e-18 95.9 246 30.5
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 8.4e-17 92.8 120 49.2
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 1.1e-16 92.4 122 46.7
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.7e-15 87.8 142 44.4
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 3.9e-14 84.0 148 39.9
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 8.7e-14 82.8 95 45.3
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.4e-11 75.5 196 32.7
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.4e-08 65.5 258 28.3
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 7.1e-08 63.2 30 86.7
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 5.1e-06 57.0 47 57.4
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 8.7e-06 56.2 54 51.9


User provided reference genes

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