Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.0e-99 366.7 175 100.0
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 9.0e-85 317.0 175 87.4
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 4.5e-84 314.7 175 86.3
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 4.5e-84 314.7 175 86.3
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 1.7e-83 312.8 175 85.1
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 2.2e-67 259.2 176 72.2
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.1e-65 252.7 175 66.9
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 4.7e-65 251.5 174 69.5
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.7e-65 251.5 174 69.5
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.4e-64 250.0 177 66.1
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 3.0e-64 248.8 174 69.5
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 6.7e-64 247.7 174 67.8
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.7e-64 247.7 174 67.8
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.1e-63 246.9 176 67.6
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 2.0e-63 246.1 172 65.7
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.0e-63 246.1 174 67.8
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 2.0e-63 246.1 182 65.9
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.6e-63 245.7 174 68.4
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 9.7e-63 243.8 180 62.8
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 9.7e-63 243.8 180 62.8
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.3e-62 243.4 175 66.9
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.7e-62 243.0 196 62.2
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.2e-62 242.7 177 66.7
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.8e-62 242.3 177 66.7
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 4.8e-62 241.5 196 62.2
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.1e-61 240.4 180 62.8
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 5.3e-61 238.0 182 65.9
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 9.1e-61 237.3 176 65.9
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 3.5e-60 235.3 181 65.2
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 1.7e-59 233.0 206 54.9
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 5.0e-59 231.5 207 54.6
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 8.5e-59 230.7 181 64.1
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.1e-58 230.3 177 63.8
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 2.5e-58 229.2 197 59.9
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 7.2e-58 227.6 177 59.9
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 9.4e-58 227.3 180 63.9
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 3.6e-57 225.3 175 62.9
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 4.7e-57 224.9 174 60.3
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 4.7e-57 224.9 176 63.6
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.3e-56 222.6 175 58.9
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 4.0e-56 221.9 176 61.9
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 8.8e-56 220.7 176 60.8
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 4.4e-55 218.4 174 59.8
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 5.7e-55 218.0 174 59.8
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 7.5e-55 217.6 176 59.1
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.7e-54 216.5 177 57.1
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 6.3e-54 214.5 175 58.3
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 8.3e-54 214.2 177 60.5
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 2.4e-53 212.6 176 58.5
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 2.4e-53 212.6 176 58.5
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.1e-53 211.8 174 59.8
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 5.4e-53 211.5 174 58.6
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 7.0e-53 211.1 175 58.3
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 9.1e-53 210.7 175 60.6
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.6e-52 209.9 174 59.8
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.6e-52 209.9 167 58.7
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 2.0e-52 209.5 174 59.8
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.5e-52 208.8 186 55.9
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 7.7e-52 207.6 174 59.2
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.0e-51 207.2 174 60.3
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.3e-51 206.8 131 67.9
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 2.2e-51 206.1 174 58.6
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 5.0e-51 204.9 174 58.6
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 6.5e-51 204.5 177 57.6
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 8.5e-51 204.1 113 77.9
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.5e-51 204.1 120 75.0
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 1.5e-50 203.4 162 62.3
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 3.6e-49 198.7 139 64.7
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 3.6e-49 198.7 127 68.5
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 4.7e-49 198.4 141 63.1
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 8.0e-49 197.6 177 52.5
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 8.0e-49 197.6 176 58.5
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 1.0e-48 197.2 174 57.5
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 1.4e-48 196.8 177 52.5
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 2.3e-48 196.1 114 75.4
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 3.0e-48 195.7 163 57.7
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 5.2e-48 194.9 174 55.7
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 6.8e-48 194.5 163 57.1
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 6.8e-48 194.5 180 55.0
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 6.8e-48 194.5 180 55.0
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 8.8e-48 194.1 170 56.5
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.7e-47 191.4 176 53.4
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 5.7e-47 191.4 168 56.5
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 7.5e-47 191.0 166 54.2
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 7.5e-47 191.0 173 53.2
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 9.8e-47 190.7 174 55.2
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.3e-46 190.3 131 64.1
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.3e-46 190.3 174 51.7
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 2.2e-46 189.5 176 54.5
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.2e-46 189.5 176 53.4
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 2.8e-46 189.1 174 52.3
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 3.7e-46 188.7 123 68.3
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 4.9e-46 188.3 124 66.1
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 8.3e-46 187.6 160 59.4
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 8.3e-46 187.6 160 59.4
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 8.3e-46 187.6 160 59.4
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 8.3e-46 187.6 160 59.4
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 8.3e-46 187.6 178 50.6
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.1e-45 187.2 175 54.3
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.4e-45 186.8 174 52.3
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.4e-45 186.8 114 68.4
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 4.1e-45 185.3 160 58.8
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 4.1e-45 185.3 160 58.8
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 7.0e-45 184.5 156 57.1
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 4.5e-44 181.8 164 53.0
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 4.5e-44 181.8 165 52.1
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 4.5e-44 181.8 123 66.7
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 2.9e-43 179.1 160 56.2
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 5.0e-43 178.3 161 55.3
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.1e-42 177.2 132 59.1
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.9e-42 176.4 131 63.4
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.9e-42 176.4 160 57.5
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.9e-42 176.4 160 57.5
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.9e-42 176.4 160 57.5
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 4.2e-42 175.3 160 56.2
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 4.2e-42 175.3 160 55.0
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 5.6e-42 174.9 185 49.7
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 7.2e-42 174.5 121 64.5
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.6e-41 173.3 174 51.1
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.6e-41 172.2 114 64.0
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.0e-41 171.0 114 64.0
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 8.0e-41 171.0 127 59.8
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.0e-40 170.6 130 59.2
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 6.8e-40 167.9 174 49.4
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.5e-39 166.8 128 58.6
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.4e-39 165.6 114 58.8
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 7.5e-39 164.5 116 61.2
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 7.5e-39 164.5 138 57.2
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.3e-38 163.7 197 42.6
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.7e-38 163.3 166 47.6
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 2.2e-38 162.9 128 57.8
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 4.9e-38 161.8 119 58.8
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 9.2e-37 157.5 141 51.8
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 1.5e-34 150.2 154 47.4
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 5.6e-34 148.3 120 56.7
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 9.5e-34 147.5 174 41.4
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.8e-33 146.0 109 55.0
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 4.7e-33 145.2 114 56.1
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.8e-32 143.3 116 56.9
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 8.9e-32 141.0 125 53.6
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 5.8e-31 138.3 128 51.6
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.8e-31 138.3 103 54.4
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 1.7e-30 136.7 118 49.2
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 3.2e-29 132.5 103 59.2
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 7.0e-29 131.3 123 51.2
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 3.5e-28 129.0 109 58.7
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.3e-27 126.3 110 58.2
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 6.6e-27 124.8 118 50.0
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 1.1e-26 124.0 112 52.7
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.9e-26 123.2 122 45.9
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.6e-26 121.7 96 58.3
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 2.1e-25 119.8 111 48.6
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.7e-25 118.6 118 47.5
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 6.2e-25 118.2 93 58.1
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.0e-24 115.5 84 58.3
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 5.2e-24 115.2 124 46.0
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 6.8e-24 114.8 107 52.3
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.5e-23 113.6 168 39.3
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 2.0e-23 113.2 168 39.3
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.6e-23 112.8 127 47.2
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 3.4e-23 112.5 125 44.8
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 7.8e-20 101.3 57 77.2
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 1.0e-19 100.9 127 45.7
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.3e-19 99.8 77 53.2
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 3.0e-19 99.4 168 35.1
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.5e-18 97.1 73 60.3
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.2e-17 94.0 68 57.4
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 5.2e-16 88.6 100 44.0
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 2.1e-12 76.6 136 39.7
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 2.3e-11 73.2 99 41.4
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.8e-08 63.5 38 68.4


User provided reference genes

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