Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012301 Sechium edule HOM05D000104 ORTHO05D005769 3.1e-114 415.2 219 100.0
CsaV3_3G038900 Cucumis sativus L. HOM05D000104 ORTHO05D005769 2.4e-90 335.9 251 74.5
MELO3C009633.2 Cucumis melo HOM05D000104 ORTHO05D005769 3.1e-90 335.5 251 74.5
ClCG10G017460 Citrullus lanatus HOM05D000104 ORTHO05D005769 9.0e-74 280.8 251 66.9
Glyma.02G174100 Glycine max HOM05D000104 ORTHO05D005769 1.2e-70 270.4 253 63.6
QL07p023509 Quercus lobata HOM05D000104 ORTHO05D005769 6.0e-70 268.1 247 63.2
Dinv19274 Davidia involucrata HOM05D000104 ORTHO05D005769 3.9e-69 265.4 257 62.3
Gohir.A08G227300 Gossypium hirsutum HOM05D000104 ORTHO05D005769 7.4e-68 261.2 254 61.8
Gorai.004G264200 Gossypium raimondii HOM05D000104 ORTHO05D005769 1.3e-67 260.4 254 61.4
CANSAT64G1790 Cannabis sativa HOM05D000104 ORTHO05D005769 3.7e-67 258.8 251 62.5
Thecc.05G185200 Theobroma cacao HOM05D000104 ORTHO05D005769 3.1e-66 255.8 258 60.9
Dinv14287 Davidia involucrata HOM05D000104 ORTHO05D005769 4.0e-66 255.4 257 59.9
Ca_25705_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005769 9.0e-66 254.2 253 59.7
Rhsim03G0007000 Rhododendron simsii HOM05D000104 ORTHO05D005769 3.4e-65 252.3 267 60.3
PGR142G4395 Punica granatum HOM05D000104 ORTHO05D005769 7.6e-65 251.1 255 60.0
Ciclev10010891m.g Citrus clementina HOM05D000104 ORTHO05D005769 2.2e-64 249.6 265 57.4
Glyma.09G112200 Glycine max HOM05D000104 ORTHO05D005769 3.8e-64 248.8 253 59.7
Duzib177G0813 Durio zibethinus HOM05D000104 ORTHO05D005769 4.9e-64 248.4 258 59.3
THA.LOC104826283 Tarenaya hassleriana HOM05D000104 ORTHO05D005769 2.5e-63 246.1 254 57.9
Nitab4.5_0003890g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005769 4.2e-63 245.4 257 58.8
Manes.15G110200 Manihot esculenta HOM05D000104 ORTHO05D005769 7.1e-63 244.6 249 58.6
CiPaw.09G030900 Carya illinoinensis HOM05D000104 ORTHO05D005769 9.3e-63 244.2 254 59.4
Sabra01G0160500 Salix brachista HOM05D000104 ORTHO05D005769 1.2e-62 243.8 253 58.1
Sabra03G0014100 Salix brachista HOM05D000104 ORTHO05D005769 6.0e-62 241.5 266 58.3
CAN.G570.8 Capsicum annuum HOM05D000104 ORTHO05D005769 7.9e-62 241.1 259 57.9
Potri.001G207700 Populus trichocarpa HOM05D000104 ORTHO05D005769 7.9e-62 241.1 253 58.5
TWI23G0183 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 3.0e-61 239.2 267 57.7
Atru.chr8.1089 Acer truncatum HOM05D000104 ORTHO05D005769 5.1e-61 238.4 254 55.9
MSTRG.19900 Avicennia marina HOM05D000104 ORTHO05D005769 5.1e-61 238.4 257 56.0
Medtr1g053955 Medicago truncatula HOM05D000104 ORTHO05D005769 6.7e-61 238.0 253 57.3
Cc06_g16020 Coffea canephora HOM05D000104 ORTHO05D005769 8.7e-61 237.7 251 58.2
Phvul.007G259200 Phaseolus vulgaris HOM05D000104 ORTHO05D005769 1.5e-60 236.9 255 58.4
Sc11g0006160 Simmondsia chinensis HOM05D000104 ORTHO05D005769 1.5e-60 236.9 260 56.5
TWI14G1199 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 4.3e-60 235.3 264 58.3
Migut.J01827 Erythranthe guttata HOM05D000104 ORTHO05D005769 9.6e-60 234.2 259 58.3
Solyc03g063220.2 Solanum lycopersicum HOM05D000104 ORTHO05D005769 1.6e-59 233.4 259 57.1
unitig_26.g9068 Utricularia gibba HOM05D000104 ORTHO05D005769 2.8e-59 232.6 258 56.6
VMungo0720G3110 Vigna mungo HOM05D000104 ORTHO05D005769 2.8e-59 232.6 255 57.6
Potri.003G022100 Populus trichocarpa HOM05D000104 ORTHO05D005769 3.7e-59 232.3 262 56.1
Lj5g0023468 Lotus japonicus HOM05D000104 ORTHO05D005769 1.1e-58 230.7 255 56.9
Sopen03g015780 Solanum pennellii HOM05D000104 ORTHO05D005769 1.1e-58 230.7 262 56.1
GSVIVG01033511001 Vitis vinifera HOM05D000104 ORTHO05D005769 1.4e-58 230.3 251 56.2
TPR.G27751 Trifolium pratense HOM05D000104 ORTHO05D005769 2.4e-58 229.6 252 56.0
Prupe.4G135700 Prunus persica HOM05D000104 ORTHO05D005769 9.0e-58 227.6 251 56.2
Aa31LG8G90 Aethionema arabicum HOM05D000104 ORTHO05D005769 1.2e-57 227.3 247 55.1
Carub.0003s1217 Capsella rubella HOM05D000104 ORTHO05D005769 1.2e-57 227.3 260 53.5
CiPaw.10G027000 Carya illinoinensis HOM05D000104 ORTHO05D005769 3.4e-57 225.7 254 55.1
Psat4g106680 Pisum sativum HOM05D000104 ORTHO05D005769 1.0e-56 224.2 252 54.0
Peaxi162Scf00258g00431 Petunia axillaris HOM05D000104 ORTHO05D005769 8.5e-56 221.1 230 59.6
AT3G12810 Arabidopsis thaliana HOM05D000104 ORTHO05D005769 1.1e-55 220.7 270 52.2
Thhalv10019875m.g Eutrema salsugineum HOM05D000104 ORTHO05D005769 1.4e-55 220.3 270 53.0
Actinidia22030 Actinidia chinensis HOM05D000104 ORTHO05D005769 2.5e-55 219.5 254 56.7
RcHm_v2.0_Chr5g0025621 Rosa chinensis HOM05D000104 ORTHO05D005769 2.5e-55 219.5 251 55.4
AL3G24490 Arabidopsis lyrata HOM05D000104 ORTHO05D005769 3.2e-55 219.2 270 51.9
Nitab4.5_0000324g0220 Nicotiana tabacum HOM05D000104 ORTHO05D005769 3.2e-55 219.2 304 49.0
FvH4_3g15170 Fragaria vesca HOM05D000104 ORTHO05D005769 7.2e-55 218.0 251 55.4
Zm00001eb187690 Zea mays HOM05D000104 ORTHO05D005769 1.2e-54 217.2 256 52.0
FAN25G3235 Fragaria x ananassa HOM05D000104 ORTHO05D005769 1.6e-54 216.9 251 55.0
Lalb_Chr21g0316431 Lupinus albus HOM05D000104 ORTHO05D005769 1.6e-54 216.9 254 54.7
PSO170G6710 Papaver somniferum HOM05D000104 ORTHO05D005769 4.6e-54 215.3 293 49.1
PSO528G0284 Papaver somniferum HOM05D000104 ORTHO05D005769 7.9e-54 214.5 293 49.1
MD10G1206600 Malus domestica HOM05D000104 ORTHO05D005769 3.0e-53 212.6 255 54.1
SHI16560 Sapria himalayana HOM05D000104 ORTHO05D005769 6.7e-53 211.5 233 56.7
Zm00001eb251100 Zea mays HOM05D000104 ORTHO05D005769 6.7e-53 211.5 252 51.2
Aqoxy4G02068 Aquilegia oxysepala HOM05D000104 ORTHO05D005769 1.5e-52 210.3 253 53.4
MBI16_g14599_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 1.5e-52 210.3 257 53.7
BolC5t34177H Brassica oleracea HOM05D000104 ORTHO05D005769 1.3e-51 207.2 238 54.6
BcaC05g29235 Brassica carinata HOM05D000104 ORTHO05D005769 2.2e-51 206.5 242 53.3
A05p36660 Brassica napus HOM05D000104 ORTHO05D005769 4.8e-51 205.3 238 53.8
BraA05t22469Z Brassica rapa HOM05D000104 ORTHO05D005769 4.8e-51 205.3 238 53.8
Nn5g28295 Nelumbo nucifera HOM05D000104 ORTHO05D005769 4.8e-51 205.3 228 58.3
SGA_v2.0_scaffold105G30483 Striga asiatica HOM05D000104 ORTHO05D005769 4.8e-51 205.3 232 57.8
Gohir.D08G247700 Gossypium hirsutum HOM05D000104 ORTHO05D005769 1.1e-50 204.1 172 70.3
SGA_v2.0_scaffold69G23071 Striga asiatica HOM05D000104 ORTHO05D005769 1.1e-50 204.1 254 53.9
C05p55090 Brassica napus HOM05D000104 ORTHO05D005769 2.4e-50 203.0 242 52.5
BcaB06g25509 Brassica carinata HOM05D000104 ORTHO05D005769 3.1e-50 202.6 237 54.0
CSS0012736 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005769 4.1e-50 202.2 254 53.5
HPP92_024595 Vanilla planifolia HOM05D000104 ORTHO05D005769 6.9e-50 201.4 255 49.0
Eucgr.K01834 Eucalyptus grandis HOM05D000104 ORTHO05D005769 1.5e-49 200.3 256 50.4
HanXRQChr01g0026921 Helianthus annuus HOM05D000104 ORTHO05D005769 1.3e-48 197.2 248 50.8
arahy.Tifrunner.gnm1.ann1.52E2E0 Arachis hypogaea HOM05D000104 ORTHO05D005769 2.9e-48 196.1 230 52.6
ATR1152G044 Amborella trichopoda HOM05D000104 ORTHO05D005769 3.8e-48 195.7 262 48.9
arahy.Tifrunner.gnm1.ann1.2E0FT9 Arachis hypogaea HOM05D000104 ORTHO05D005769 3.8e-48 195.7 230 52.6
ECA248G0087 Erigeron canadensis HOM05D000104 ORTHO05D005769 3.8e-48 195.7 249 50.6
Ah.13g077720 Amaranthus hybridus HOM05D000104 ORTHO05D005769 1.1e-47 194.1 237 55.7
TAR381G0643 Trochodendron aralioides HOM05D000104 ORTHO05D005769 1.1e-47 194.1 254 49.6
HanXRQChr11g0348031 Helianthus annuus HOM05D000104 ORTHO05D005769 1.4e-47 193.7 251 49.4
FAN11G3896 Fragaria x ananassa HOM05D000104 ORTHO05D005769 2.7e-46 189.5 251 51.0
FAN21G3997 Fragaria x ananassa HOM05D000104 ORTHO05D005769 1.8e-45 186.8 251 50.2
DCAR_006645 Daucus carota HOM05D000104 ORTHO05D005769 6.7e-45 184.9 224 53.6
Hund17598 Selenicereus undatus HOM05D000104 ORTHO05D005769 6.3e-43 178.3 289 43.6
AUR62018509 Chenopodium quinoa HOM05D000104 ORTHO05D005769 6.9e-42 174.9 221 52.9
Lsat_1_v5_gn_1_55460 Lactuca sativa HOM05D000104 ORTHO05D005769 1.3e-40 170.6 222 51.4
SalBow6G1274 Salvia bowleyana HOM05D000104 ORTHO05D005769 1.1e-39 167.5 240 48.8
AUR62020910 Chenopodium quinoa HOM05D000104 ORTHO05D005769 1.9e-39 166.8 216 50.9
Haze_19977 Corylus avellana HOM05D000104 ORTHO05D005769 1.9e-39 166.8 203 52.7
Oeu033742.2 Olea europaea HOM05D000104 ORTHO05D005769 1.9e-39 166.8 281 44.5
CDE05G0740 Ceratophyllum demersum HOM05D000104 ORTHO05D005769 7.2e-39 164.9 346 40.2
EL10Ac3g07414 Beta vulgaris HOM05D000104 ORTHO05D005769 3.0e-37 159.5 232 47.4
Lj3C921T8 Lonicera japonica HOM05D000104 ORTHO05D005769 1.3e-32 144.1 147 60.5
Lj3C919G8 Lonicera japonica HOM05D000104 ORTHO05D005769 5.0e-32 142.1 152 57.9
MBI10_g44388_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 5.5e-31 138.7 234 44.9
CBR_g19274 Chara braunii HOM05D000104 ORTHO05D005769 2.7e-30 136.3 105 65.7
Pp3c10_13800 Physcomitrium patens HOM05D000104 ORTHO05D005769 6.1e-30 135.2 248 40.7
Pp3c3_30220 Physcomitrium patens HOM05D000104 ORTHO05D005769 3.0e-29 132.9 176 50.0
Oeu063882.1 Olea europaea HOM05D000104 ORTHO05D005769 4.4e-28 129.0 145 53.1
AagrBONN_evm.TU.Sc2ySwM_340.21 Anthoceros agrestis HOM05D000104 ORTHO05D005769 1.1e-23 114.4 138 47.8
Mapoly0111s0052 Marchantia polymorpha HOM05D000104 ORTHO05D005769 5.5e-23 112.1 274 35.8
MBI10_g00720_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 2.0e-20 103.6 110 54.5
COL.COLO4_22907 Corchorus olitorius HOM05D000104 ORTHO05D005769 1.3e-19 100.9 219 38.4
MBI10_g00718_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 4.8e-19 99.0 144 49.3
PRCOL_00002928 Prasinoderma coloniale HOM05D000104 ORTHO05D005769 7.7e-17 91.7 233 33.0
Lj3A919G40 Lonicera japonica HOM05D000104 ORTHO05D005769 3.2e-15 86.3 59 76.3
Lj3C921G6 Lonicera japonica HOM05D002180 ORTHO05D001339 4.7e-14 82.4 59 74.6
VMungo1215G2695 Vigna mungo HOM05D008141 ORTHO05D008631 2.0e-12 77.0 49 77.6
MCO13G222 Micromonas commoda HOM05D000104 ORTHO05D005769 7.5e-12 75.1 218 31.7
MCO13G223 Micromonas commoda HOM05D000104 ORTHO05D005769 7.5e-12 75.1 218 31.7
Cre14.g618860 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D005769 4.9e-11 72.4 137 33.6
Hma1.2p1_0784F.1_g217140 Hydrangea macrophylla HOM05D000104 ORTHO05D005769 1.6e-09 67.4 111 46.8
Cpa.g.c33695 Carica papaya HOM05D000104 ORTHO05D005769 9.5e-07 58.2 48 66.7
Cpa.g.c39138 Carica papaya HOM05D000104 ORTHO05D005769 3.6e-06 56.2 37 75.7


User provided reference genes

Program Settings