Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 2.2e-193 678.7 326 100.0
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 1.3e-169 599.7 326 87.7
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 7.1e-168 594.0 326 85.6
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 2.7e-159 565.5 326 82.8
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 6.3e-116 421.4 322 62.7
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 1.8e-115 419.9 311 64.0
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 2.4e-115 419.5 331 61.0
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 2.0e-114 416.4 317 62.1
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 2.7e-114 416.0 275 67.6
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 2.7e-114 416.0 275 67.6
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 1.9e-112 409.8 320 60.3
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 4.3e-112 408.7 324 60.5
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 7.3e-112 407.9 275 65.8
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 7.3e-112 407.9 255 71.0
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 9.5e-112 407.5 308 63.3
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 9.5e-112 407.5 313 63.6
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 9.5e-112 407.5 309 63.4
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 1.8e-110 403.3 259 69.5
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 5.2e-110 401.7 324 61.1
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 6.8e-110 401.4 316 62.0
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 6.8e-110 401.4 318 59.1
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 1.5e-109 400.2 317 61.2
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 2.6e-109 399.4 330 60.0
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 5.7e-109 398.3 320 60.6
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 5.7e-109 398.3 331 60.1
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 5.7e-109 398.3 276 65.2
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 5.7e-109 398.3 364 54.7
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 7.5e-109 397.9 320 60.6
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 1.3e-108 397.1 283 62.9
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 2.2e-108 396.4 335 57.3
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 2.2e-108 396.4 289 64.0
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 2.9e-108 396.0 327 58.1
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 1.8e-107 393.3 322 57.1
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 4.1e-107 392.1 310 60.0
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 7.0e-107 391.3 328 59.8
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 1.6e-106 390.2 275 66.2
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 1.6e-106 390.2 327 58.4
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 2.0e-106 389.8 328 58.2
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 6.0e-106 388.3 324 58.0
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 7.8e-106 387.9 324 57.7
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 1.0e-105 387.5 342 56.7
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 2.3e-105 386.3 272 65.1
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 3.0e-105 386.0 325 57.8
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 3.9e-105 385.6 261 67.8
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 3.9e-105 385.6 292 61.6
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 5.0e-105 385.2 279 62.7
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 6.6e-105 384.8 263 67.3
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 2.5e-104 382.9 283 63.6
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 5.6e-104 381.7 259 67.2
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 1.2e-103 380.6 282 63.1
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 1.6e-103 380.2 286 62.6
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 2.1e-103 379.8 282 63.1
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 2.8e-103 379.4 285 63.2
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 4.7e-103 378.6 282 63.5
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 8.0e-103 377.9 282 62.8
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 2.3e-102 376.3 293 62.8
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 4.0e-102 375.6 271 63.5
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 6.8e-102 374.8 307 59.0
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 1.2e-101 374.0 305 59.0
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 1.2e-101 374.0 298 55.7
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 2.0e-101 373.2 297 59.3
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 2.6e-101 372.9 259 65.6
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 4.4e-101 372.1 336 57.1
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 4.4e-101 372.1 256 64.1
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 4.4e-101 372.1 260 64.2
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 5.8e-101 371.7 297 58.9
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 1.7e-100 370.2 259 66.8
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 2.9e-100 369.4 338 55.3
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 3.7e-100 369.0 335 55.2
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 4.9e-100 368.6 333 56.2
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 4.9e-100 368.6 376 50.3
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 1.9e-99 366.7 259 64.9
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 1.3e-97 360.5 324 55.2
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 2.3e-97 359.8 260 61.2
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 3.9e-97 359.0 260 61.2
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 3.9e-97 359.0 331 56.2
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 1.1e-96 357.5 251 64.5
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 1.5e-96 357.1 309 56.6
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 1.1e-94 350.9 347 52.4
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 5.2e-94 348.6 247 67.6
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 2.0e-93 346.7 324 56.2
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 1.3e-92 344.0 244 65.2
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 2.2e-92 343.2 281 54.4
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 3.7e-92 342.4 299 55.9
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 1.3e-89 334.0 243 60.1
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 6.6e-89 331.6 328 52.4
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 1.2e-85 320.9 291 54.0
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 7.6e-85 318.2 207 69.1
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 2.9e-84 316.2 284 51.4
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 1.1e-80 304.3 254 55.1
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 2.5e-80 303.1 297 49.2
AUR62036149 Chenopodium quinoa HOM05D006724 ORTHO05D008514 9.6e-80 301.2 203 64.5
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 2.8e-79 299.7 245 58.0
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 4.7e-79 298.9 259 52.5
CBR_g4826 Chara braunii HOM05D000829 ORTHO05D008514 1.2e-74 284.3 268 51.9
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 2.1e-74 283.5 177 69.5
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 2.1e-74 283.5 265 51.7
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 3.3e-64 249.6 347 41.5
Ca_07350_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 2.1e-63 246.9 225 52.4
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 1.1e-62 244.6 328 43.6
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 8.2e-55 218.4 158 64.6
Nn1g04264 Nelumbo nucifera HOM05D006724 ORTHO05D008514 7.6e-53 211.8 142 66.2
CDE08G0827 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 1.0e-49 201.4 143 60.8
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 2.4e-46 190.3 150 60.7
arahy.Tifrunner.gnm1.ann1.60K44K Arachis hypogaea HOM05D006724 ORTHO05D008514 1.9e-43 180.6 190 48.4
Hund22832 Selenicereus undatus HOM05D006724 ORTHO05D008514 7.4e-40 168.7 147 58.5
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 2.4e-38 163.7 111 64.9
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 4.1e-38 162.9 285 35.8
arahy.Tifrunner.gnm1.ann1.E3N302 Arachis hypogaea HOM05D006724 ORTHO05D008514 3.1e-30 136.7 159 44.0
TAR627G0912 Trochodendron aralioides HOM05D006724 ORTHO05D008514 4.5e-29 132.9 148 49.3
Hma1.2p1_0416F.1_g148430 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 6.5e-28 129.0 85 65.9
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 2.8e-23 113.6 85 63.5
Oeu019299.2 Olea europaea HOM05D006724 ORTHO05D008514 4.1e-22 109.8 151 43.7
Os06g0353400 Oryza sativa ssp. japonica HOM05D006724 ORTHO05D008514 5.3e-22 109.4 107 46.7
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 5.5e-19 99.4 63 74.6
SEGI_32986 Sequoiadendron giganteum HOM05D005005 ORTHO05D006178 1.4e-17 94.7 221 27.6
CDE02G0934 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 8.8e-17 92.0 62 66.1
DCAR_025325 Daucus carota HOM05D005005 ORTHO05D006178 2.6e-16 90.5 213 24.9
Cre01.g033950 Chlamydomonas reinhardtii HOM05D005005 ORTHO05D006178 4.4e-16 89.7 210 29.0
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 5.7e-16 89.4 208 25.5
ATR1096G052 Amborella trichopoda HOM05D005005 ORTHO05D006178 7.5e-16 89.0 206 25.7
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 9.7e-16 88.6 230 24.3
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 1.3e-15 88.2 204 26.0
CANSAT54G2608 Cannabis sativa HOM05D005005 ORTHO05D006178 1.7e-15 87.8 203 26.6
HanXRQChr11g0341211 Helianthus annuus HOM05D005005 ORTHO05D006178 2.8e-15 87.0 205 26.3
SMO367G0260 Selaginella moellendorffii HOM05D005005 ORTHO05D006178 4.8e-15 86.3 220 22.7
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 8.2e-15 85.5 206 26.7
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 1.4e-14 84.7 206 25.7
CiPaw.14G111500 Carya illinoinensis HOM05D005005 ORTHO05D006178 1.4e-14 84.7 204 25.5
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 1.4e-14 84.7 203 25.1
Os01g0280000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 1.4e-14 84.7 205 24.9
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 1.8e-14 84.3 203 25.1
Aqoxy1G00392 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 7.0e-14 82.4 208 24.0
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 1.6e-13 81.3 204 25.5
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 1.3e-12 78.2 51 72.5
unitig_86.g29839 Utricularia gibba HOM05D006724 ORTHO05D008514 6.5e-12 75.9 67 52.2
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 1.9e-11 74.3 204 27.0
CDE02G0295 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 3.0e-09 67.0 107 29.0
SGA_v2.0_scaffold79G25606 Striga asiatica HOM05D006724 ORTHO05D008514 4.8e-07 59.7 44 50.0


User provided reference genes

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