Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 0.0e+00 1496.5 736 100.0
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 0.0e+00 1301.6 722 89.3
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 0.0e+00 1281.5 721 88.1
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 0.0e+00 1273.8 721 87.9
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 0.0e+00 1270.0 721 87.7
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 5.3e-304 1047.3 724 71.0
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.4e-299 1032.7 724 71.0
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 9.7e-298 1026.5 724 69.3
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 1.3e-297 1026.2 724 69.3
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 2.8e-297 1025.0 721 69.9
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 1.4e-296 1022.7 762 67.6
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 3.8e-294 1014.6 725 69.0
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 3.2e-293 1011.5 725 69.7
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.5e-290 1002.7 726 68.0
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.0e-290 1002.3 720 68.5
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 9.8e-290 1000.0 728 69.1
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.1e-288 996.5 726 68.2
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.1e-288 996.5 726 67.8
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 5.4e-288 994.2 721 69.1
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 1.1e-285 986.5 725 66.5
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 1.5e-285 986.1 740 66.8
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 4.7e-284 981.1 733 66.3
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.6e-282 975.3 721 65.6
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 9.8e-282 973.4 729 64.2
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 3.1e-280 968.4 724 66.7
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 4.2e-277 958.0 721 66.4
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 2.3e-275 952.2 731 66.2
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 5.2e-275 951.0 723 66.1
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 2.9e-273 945.3 735 64.9
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 1.8e-272 942.6 723 65.4
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.4e-272 942.2 726 64.2
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 9.2e-272 940.3 720 64.0
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 9.2e-272 940.3 732 65.6
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.7e-270 936.0 627 71.3
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 7.3e-269 930.6 730 63.6
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 1.2e-268 929.9 727 63.7
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.6e-268 929.5 720 63.8
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 2.1e-268 929.1 725 64.3
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 6.2e-268 927.5 724 63.7
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.3e-267 925.6 720 63.9
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 4.4e-266 921.4 723 63.1
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 1.7e-265 919.5 725 62.9
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.1e-264 916.8 721 63.5
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 7.0e-264 914.1 738 62.6
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 9.2e-264 913.7 722 62.7
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 1.2e-263 913.3 725 62.8
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 1.6e-263 912.9 738 62.1
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 1.1e-261 906.7 737 63.9
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.9e-261 906.0 722 62.2
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 2.5e-261 905.6 718 61.7
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.3e-261 905.2 737 63.8
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.6e-261 904.4 737 63.6
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 9.5e-261 903.7 739 61.2
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.8e-260 902.1 761 60.8
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 3.6e-260 901.7 727 62.4
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 6.2e-260 901.0 720 62.4
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 8.1e-260 900.6 731 62.4
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 1.8e-259 899.4 737 63.6
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.3e-259 899.0 737 63.4
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.3e-259 899.0 739 61.0
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.5e-258 896.3 740 61.6
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 9.8e-258 893.6 712 63.2
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 6.4e-257 891.0 728 61.0
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 5.4e-256 887.9 718 61.7
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.6e-255 886.3 727 61.5
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 4.6e-255 884.8 720 61.2
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 7.8e-255 884.0 778 58.6
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 7.8e-255 884.0 720 61.1
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 7.8e-255 884.0 722 61.2
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 1.0e-254 883.6 723 61.3
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.3e-254 883.2 732 61.7
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.7e-254 882.9 733 61.9
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 6.6e-254 880.9 721 61.3
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.1e-253 880.2 735 60.3
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 2.5e-253 879.0 731 60.7
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 1.2e-252 876.7 736 60.5
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.6e-252 876.3 738 60.2
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.7e-252 874.8 737 62.6
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 4.7e-252 874.8 734 59.9
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 1.2e-250 870.2 733 60.8
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 9.9e-250 867.1 718 61.6
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 9.9e-250 867.1 722 61.2
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 4.9e-249 864.8 744 60.5
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.4e-248 863.2 734 60.5
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 2.4e-248 862.4 619 69.1
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 1.2e-247 860.1 731 60.3
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 2.1e-247 859.4 730 61.0
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 2.7e-247 859.0 735 61.1
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 3.9e-246 855.1 732 60.5
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.1e-246 854.7 597 70.4
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 7.3e-245 850.9 731 59.9
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 3.6e-244 848.6 677 63.2
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 6.2e-244 847.8 738 58.5
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.8e-243 846.3 766 56.9
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 4.0e-243 845.1 724 60.6
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 4.0e-243 845.1 735 58.8
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 5.2e-243 844.7 735 59.7
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 6.8e-243 844.3 735 59.7
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 8.9e-243 844.0 736 59.4
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.2e-242 843.6 733 59.3
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 1.5e-242 843.2 735 58.6
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 3.4e-242 842.0 732 59.3
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 5.8e-242 841.3 728 59.6
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 4.2e-240 835.1 733 58.7
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 9.3e-240 833.9 733 58.9
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 1.2e-239 833.6 722 58.6
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 7.8e-239 830.9 726 58.3
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 1.3e-238 830.1 738 58.5
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 8.7e-238 827.4 725 58.8
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 1.9e-237 826.2 645 63.9
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 3.3e-237 825.5 726 58.5
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 9.6e-237 823.9 675 62.1
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 1.6e-236 823.2 760 56.8
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 2.8e-236 822.4 727 58.7
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 8.1e-236 820.8 727 58.7
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 2.4e-235 819.3 727 58.3
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 2.6e-234 815.8 715 58.7
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 2.6e-234 815.8 724 59.8
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 3.4e-234 815.5 725 57.0
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 9.9e-234 813.9 732 57.7
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 2.2e-233 812.8 726 57.3
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 4.9e-233 811.6 717 58.3
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 4.2e-232 808.5 732 57.7
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 3.5e-231 805.4 668 61.7
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 6.0e-231 804.7 719 57.9
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.3e-230 803.5 711 58.6
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.1e-229 800.4 712 58.4
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 7.3e-229 797.7 732 57.2
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 4.0e-227 792.0 740 55.3
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 8.4e-225 784.3 720 56.7
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 6.0e-223 778.1 725 56.0
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 8.7e-222 774.2 728 57.0
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 2.9e-217 759.2 731 55.5
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 1.3e-212 743.8 734 54.5
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 9.0e-211 737.6 734 54.1
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 5.0e-209 731.9 727 52.7
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.1e-208 730.7 723 55.0
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 1.4e-208 730.3 726 52.6
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 4.6e-207 725.3 669 56.1
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 3.0e-206 722.6 722 54.0
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 4.1e-203 712.2 733 52.3
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 7.2e-192 674.9 604 57.0
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 2.7e-175 619.8 425 70.4
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 2.6e-157 560.1 622 50.6
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.6e-143 514.2 721 40.6
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 2.8e-143 513.5 745 39.7
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 9.2e-139 498.4 502 54.6
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 9.2e-131 471.9 819 36.8
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 8.9e-126 455.3 817 36.1
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 2.8e-119 433.7 809 35.5
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 3.5e-114 416.8 519 45.1
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.1e-94 350.1 250 64.4
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.2e-91 340.5 308 57.8
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 4.3e-88 330.1 311 57.6
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 7.4e-88 329.3 541 38.8
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.1e-82 311.2 687 33.6
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 6.5e-76 289.7 259 57.1
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 2.0e-72 278.1 223 63.2
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 2.6e-72 277.7 221 60.2
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 4.7e-66 256.9 157 75.2
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 2.6e-64 251.1 271 51.3
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.0e-60 239.2 194 62.9
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 2.9e-52 211.1 217 52.5
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 4.7e-50 203.8 205 54.1
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.0e-48 198.4 119 79.0
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 1.3e-47 195.7 761 25.0
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 7.8e-45 186.4 190 51.6
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 3.4e-40 171.0 163 55.2
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.4e-38 165.6 104 74.0
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 3.5e-37 161.0 733 25.2
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 3.0e-28 131.3 369 29.3
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.9e-28 131.0 105 58.1
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.6e-28 129.8 105 57.1
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.3e-27 127.9 105 55.2
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.3e-27 127.5 105 56.2
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 2.7e-21 108.2 95 60.0
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 1.5e-19 102.4 126 49.2
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.6e-19 100.5 105 48.6
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.6e-18 99.0 476 22.7
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.4e-14 84.0 105 42.9
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 1.4e-09 69.3 106 38.7
Lj4P754T16 Lonicera japonica HOM05D003723 ORTHO05D004306 9.9e-08 63.2 41 65.9
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 2.9e-07 61.6 107 34.6


User provided reference genes

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