Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 0.0e+00 1153.7 626 100.0
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.5e-259 899.4 586 78.0
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 5.1e-255 884.4 588 78.6
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 7.3e-254 880.6 586 77.6
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 1.5e-174 617.1 592 55.6
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 2.1e-168 596.7 572 57.3
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 6.2e-168 595.1 557 59.2
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.3e-165 587.4 544 58.6
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 6.0e-163 578.6 581 55.6
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 6.2e-160 568.5 537 56.2
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 4.9e-157 558.9 529 52.0
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 5.4e-156 555.4 530 54.0
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 2.7e-155 553.1 532 56.6
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 6.0e-155 552.0 554 51.6
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 3.9e-154 549.3 528 57.4
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 8.6e-154 548.1 541 56.4
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 2.5e-153 546.6 576 53.5
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 3.3e-153 546.2 533 54.2
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 4.3e-153 545.8 530 53.4
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 5.6e-153 545.4 537 56.1
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 2.8e-152 543.1 520 56.9
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.4e-151 540.8 530 51.5
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.8e-151 540.4 530 51.5
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.3e-151 540.0 579 52.7
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.1e-151 539.7 530 51.3
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 5.2e-151 538.9 530 51.3
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 5.2e-151 538.9 564 50.9
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 1.7e-149 533.9 524 53.2
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 3.8e-149 532.7 541 54.2
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.2e-147 527.7 531 54.0
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.1e-147 526.9 566 52.1
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 8.6e-146 521.5 530 52.6
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.1e-145 521.2 582 52.4
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 1.9e-145 520.4 541 53.4
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 7.6e-142 508.4 535 53.3
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 6.4e-141 505.4 542 50.0
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.9e-140 503.8 557 51.0
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 7.8e-139 498.4 550 47.6
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 7.3e-137 491.9 525 50.1
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 1.1e-135 488.0 508 53.9
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 6.9e-135 485.3 523 48.6
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 1.2e-134 484.6 569 49.0
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 1.5e-134 484.2 536 51.5
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 3.4e-134 483.0 591 46.5
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.2e-133 480.3 544 49.3
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 2.9e-133 479.9 516 51.9
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 3.8e-133 479.6 531 49.9
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 2.7e-131 473.4 540 49.4
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 3.5e-131 473.0 539 48.1
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.8e-130 470.7 502 48.4
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.9e-130 469.5 535 49.0
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 1.3e-128 464.5 516 49.6
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 1.6e-128 464.2 550 45.5
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 4.8e-128 462.6 521 50.3
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.8e-125 453.0 533 44.7
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 8.4e-125 451.8 526 44.9
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.4e-124 450.3 534 47.9
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.2e-123 448.0 534 47.4
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.6e-123 447.6 542 47.8
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 3.5e-123 446.4 528 47.3
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 7.9e-123 445.3 525 45.5
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 7.9e-123 445.3 541 47.3
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 1.0e-122 444.9 533 46.5
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 1.3e-122 444.5 533 47.3
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.1e-121 441.4 557 46.3
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.9e-121 440.7 398 60.3
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 4.0e-119 433.0 557 46.1
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 3.4e-118 429.9 528 47.3
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 2.3e-114 417.2 530 47.0
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 3.0e-114 416.8 567 44.4
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 4.1e-111 406.4 555 41.6
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 3.2e-108 396.7 368 58.2
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 2.1e-107 394.0 475 48.8
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 3.6e-107 393.3 523 45.7
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 7.9e-107 392.1 354 61.9
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 8.7e-106 388.7 515 41.0
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.1e-105 388.3 530 43.4
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 4.8e-104 382.9 413 48.4
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 6.3e-104 382.5 525 42.1
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 2.6e-102 377.1 509 40.5
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 3.4e-102 376.7 511 42.9
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 2.0e-97 360.9 544 41.9
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 1.2e-94 351.7 481 39.9
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 1.5e-94 351.3 538 42.0
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 5.9e-94 349.4 462 47.6
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 2.1e-91 340.9 400 45.2
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.1e-87 328.6 348 48.6
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 7.0e-87 325.9 533 37.5
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 3.7e-80 303.5 563 32.7
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 6.3e-80 302.8 533 35.3
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 3.8e-77 293.5 511 34.8
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.1e-76 292.0 522 33.3
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 4.2e-76 290.0 341 44.6
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.2e-73 282.0 467 39.4
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.0e-73 281.2 352 44.0
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 4.5e-70 270.0 514 33.9
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 2.3e-69 267.7 250 56.0
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 3.1e-63 247.3 589 30.6
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 7.8e-62 242.7 317 42.6
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 7.8e-62 242.7 656 29.0
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 5.0e-61 240.0 350 40.3
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.3e-58 231.1 311 42.1
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.4e-57 226.9 260 46.9
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 9.2e-55 219.2 322 46.6
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.3e-53 214.5 239 46.9
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 3.3e-44 184.1 183 59.6
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 2.1e-43 181.4 105 71.4
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 5.8e-41 173.3 105 67.6
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 3.9e-37 160.6 102 66.7
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.9e-36 158.3 94 69.1
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 9.5e-36 156.0 94 67.0
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 3.1e-34 151.0 157 54.1
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 4.4e-33 147.1 267 34.8
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 5.8e-33 146.7 89 65.2
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 7.6e-33 146.4 93 66.7
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 8.4e-32 142.9 108 59.3
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 5.4e-31 140.2 114 54.4
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 9.2e-31 139.4 117 56.4
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.6e-30 138.7 154 45.5
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 2.7e-30 137.9 104 54.8
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 1.6e-27 128.6 98 58.2
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.4e-26 125.6 110 55.5
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 2.9e-24 117.9 98 52.0
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 8.4e-24 116.3 151 44.4
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 1.4e-23 115.5 200 44.5
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 1.6e-22 112.1 479 25.9
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 1.7e-21 108.6 81 54.3
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 1.9e-20 105.1 93 57.0
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.3e-20 103.2 80 55.0
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 1.5e-17 95.5 60 58.3
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 2.6e-17 94.7 126 40.5
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 5.8e-17 93.6 85 42.4
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 2.9e-16 91.3 92 45.7
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 2.9e-16 91.3 84 50.0
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 9.3e-15 86.3 87 47.1
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 2.1e-14 85.1 109 43.1
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 2.7e-14 84.7 102 40.2
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.1e-12 79.3 68 50.0
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.9e-12 78.6 87 40.2
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 4.3e-12 77.4 75 42.7
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.8e-11 74.7 77 42.9
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.8e-11 74.7 77 42.9
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 8.1e-11 73.2 76 39.5
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 4.5e-09 67.4 53 60.4
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 9.9e-09 66.2 63 50.8
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.3e-08 65.9 191 27.7
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 1.7e-08 65.5 43 69.8
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.7e-08 65.5 115 27.0
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.9e-08 64.7 63 44.4
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 3.8e-08 64.3 57 52.6
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.4e-07 62.4 47 55.3
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.2e-07 61.2 40 55.0
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 3.5e-06 57.8 34 61.8


User provided reference genes

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