Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 3.5e-230 801.2 390 100.0
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 2.4e-186 655.6 361 89.5
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 1.7e-179 632.9 361 87.0
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 4.0e-141 505.4 362 69.1
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 1.2e-140 503.8 366 68.3
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 4.9e-139 498.4 358 69.0
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 4.6e-137 491.9 358 68.4
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 7.8e-137 491.1 361 67.0
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 3.9e-136 488.8 363 67.2
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 6.6e-136 488.0 363 66.7
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 6.6e-136 488.0 359 67.1
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.1e-135 487.3 363 66.7
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 7.3e-135 484.6 359 66.9
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 1.2e-134 483.8 367 67.0
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 3.6e-134 482.3 366 65.6
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 3.6e-134 482.3 363 66.4
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 3.6e-134 482.3 367 65.4
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 1.4e-133 480.3 363 66.4
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 1.8e-133 479.9 363 66.4
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 2.6e-132 476.1 365 66.6
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 1.3e-131 473.8 360 65.0
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 1.7e-131 473.4 360 65.8
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 2.2e-131 473.0 358 65.4
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 2.9e-131 472.6 356 65.7
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 2.9e-131 472.6 362 66.6
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 2.4e-130 469.5 367 65.7
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 3.2e-130 469.2 284 83.1
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 1.6e-129 466.8 358 64.5
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 2.1e-129 466.5 359 64.9
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 3.5e-129 465.7 362 65.5
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 7.8e-129 464.5 353 64.3
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 7.8e-129 464.5 359 63.2
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 1.7e-128 463.4 362 64.1
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 1.7e-128 463.4 356 64.3
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 3.9e-128 462.2 356 63.8
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 6.6e-128 461.5 356 63.8
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 1.1e-127 460.7 362 63.5
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 1.5e-127 460.3 356 65.4
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 3.3e-127 459.1 378 61.9
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 3.3e-127 459.1 355 63.9
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 5.6e-127 458.4 365 63.3
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 2.1e-126 456.4 357 65.3
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 6.2e-126 454.9 353 64.3
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 3.1e-125 452.6 364 62.1
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 5.2e-125 451.8 348 65.2
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.5e-124 450.3 367 62.1
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 2.0e-124 449.9 352 63.9
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 7.6e-124 448.0 363 63.6
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 9.9e-124 447.6 362 64.1
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 1.7e-123 446.8 360 63.3
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 2.2e-123 446.4 358 63.7
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 8.4e-123 444.5 370 61.1
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 1.4e-122 443.7 361 63.2
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 1.9e-122 443.4 352 62.8
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 4.2e-122 442.2 356 62.6
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 1.6e-121 440.3 361 62.3
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 7.8e-121 438.0 358 60.9
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 1.0e-120 437.6 391 57.8
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 2.3e-120 436.4 335 64.8
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 5.1e-120 435.3 361 62.0
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 1.9e-119 433.3 363 60.6
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 3.3e-119 432.6 363 61.2
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 3.3e-119 432.6 355 61.7
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 2.1e-118 429.9 360 61.1
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 1.4e-117 427.2 343 63.3
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 1.5e-116 423.7 359 61.0
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 9.9e-116 421.0 359 60.4
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 1.3e-115 420.6 367 58.0
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 1.3e-115 420.6 358 60.3
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 2.4e-114 416.4 357 60.2
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 4.2e-114 415.6 356 59.0
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 4.6e-113 412.1 331 62.5
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 4.6e-113 412.1 353 58.9
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 1.1e-111 407.5 356 56.5
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 2.6e-108 396.4 327 60.6
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 9.9e-108 394.4 371 57.4
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 2.8e-102 376.3 307 62.2
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 3.7e-102 375.9 302 63.6
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 2.6e-100 369.8 291 64.3
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 3.5e-97 359.4 288 64.6
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 4.3e-95 352.4 352 53.1
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 6.3e-94 348.6 428 46.5
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 3.8e-91 339.3 354 49.4
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 4.3e-87 325.9 318 55.0
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 5.7e-87 325.5 297 57.2
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 4.8e-86 322.4 439 41.2
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 3.9e-80 302.8 350 50.9
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 9.7e-79 298.1 270 58.1
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 1.2e-76 291.2 276 55.1
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 3.4e-76 289.7 377 46.7
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 2.7e-73 280.0 522 35.8
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 6.7e-72 275.4 178 72.5
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 2.0e-68 263.8 205 63.4
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 2.2e-67 260.4 281 52.3
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.5e-66 257.7 263 54.0
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 1.9e-66 257.3 245 56.3
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 1.6e-65 254.2 292 47.6
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 1.1e-63 248.1 359 40.7
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 4.8e-62 242.7 355 43.9
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 2.4e-61 240.4 155 72.3
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 3.1e-61 240.0 264 49.6
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 5.5e-58 229.2 254 51.2
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 1.8e-56 224.2 413 34.6
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 3.4e-47 193.4 404 36.4
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 9.2e-45 185.3 194 52.6
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 7.5e-39 165.6 195 47.7
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 2.4e-37 160.6 365 33.7
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 3.5e-36 156.8 111 67.6
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 5.9e-36 156.0 132 61.4
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 1.2e-31 141.7 85 74.1
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 1.7e-30 137.9 204 40.2
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 2.4e-29 134.0 311 33.1
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.3e-27 127.5 141 44.7
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.5e-26 124.0 88 62.5
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 1.2e-25 121.7 84 71.4
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 4.0e-24 116.7 80 70.0
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 5.8e-23 112.8 165 43.0
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 7.8e-20 102.4 62 75.8
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 8.9e-16 89.0 66 63.6
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.4e-15 87.0 63 63.5
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.3e-14 85.1 63 61.9
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.4e-13 81.6 52 69.2
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 3.3e-10 70.5 37 83.8
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.6e-09 68.2 51 62.7
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 2.1e-09 67.8 120 37.5
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 2.8e-09 67.4 83 41.0
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 2.0e-07 61.2 40 65.0
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 2.6e-07 60.8 56 58.9
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 5.8e-07 59.7 28 89.3


User provided reference genes

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