Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 1.4e-226 789.3 388 100.0
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 5.3e-186 654.4 388 81.7
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 1.3e-184 649.8 416 77.6
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 1.4e-183 646.4 388 82.0
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 3.1e-154 548.9 396 68.7
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 5.3e-154 548.1 386 67.4
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 5.9e-153 544.7 392 67.6
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 5.9e-153 544.7 381 68.5
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.0e-152 543.9 376 72.3
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 3.8e-152 542.0 393 67.7
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 1.5e-151 540.0 389 66.8
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 1.5e-151 540.0 392 66.8
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 6.1e-150 534.6 410 64.6
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 1.2e-148 530.4 396 66.7
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.0e-148 529.6 379 66.5
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 3.4e-148 528.9 389 67.1
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 4.4e-148 528.5 396 66.4
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 9.8e-148 527.3 397 64.7
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.3e-147 526.9 390 65.9
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 2.8e-147 525.8 381 66.1
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 4.8e-147 525.0 391 67.3
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 6.3e-147 524.6 392 65.8
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 1.1e-146 523.9 388 66.0
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 1.8e-146 523.1 388 64.7
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 1.8e-146 523.1 393 66.7
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 2.4e-146 522.7 384 67.7
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 2.4e-146 522.7 377 67.1
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 5.4e-146 521.5 381 66.1
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 1.2e-145 520.4 393 65.6
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 1.0e-144 517.3 388 65.2
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 1.3e-144 516.9 376 65.7
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 2.3e-144 516.2 382 65.4
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.9e-144 515.8 431 60.3
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 3.8e-144 515.4 392 64.3
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 6.6e-144 514.6 393 65.4
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 1.1e-143 513.8 392 64.8
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 3.3e-143 512.3 389 65.6
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 4.2e-143 511.9 426 60.3
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 3.6e-142 508.8 389 63.2
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 8.0e-142 507.7 403 61.8
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 1.8e-141 506.5 390 63.8
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 2.3e-141 506.1 388 63.1
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 5.2e-141 505.0 408 62.7
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 1.5e-140 503.4 380 62.6
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 5.7e-140 501.5 380 62.6
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 9.8e-140 500.7 380 62.6
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 2.4e-138 496.1 410 60.2
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 1.2e-137 493.8 387 62.0
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 4.5e-137 491.9 459 56.6
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 5.9e-137 491.5 388 62.6
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 1.0e-136 490.7 475 53.9
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.7e-136 490.0 386 61.9
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.9e-135 486.5 409 59.9
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 7.3e-135 484.6 355 65.1
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 1.6e-134 483.4 389 60.7
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 8.0e-134 481.1 386 60.6
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 1.4e-133 480.3 388 59.3
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 1.8e-133 479.9 387 62.8
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 1.2e-132 477.2 385 61.3
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 1.5e-132 476.9 390 59.7
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 5.8e-132 474.9 390 59.2
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 7.5e-132 474.6 387 58.7
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 1.7e-131 473.4 389 61.7
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 2.2e-131 473.0 390 58.7
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 2.2e-131 473.0 390 58.7
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 2.9e-131 472.6 358 64.5
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 4.9e-131 471.9 386 61.1
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 4.1e-130 468.8 387 58.4
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 9.2e-130 467.6 395 59.5
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 1.0e-128 464.2 387 59.2
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 5.6e-127 458.4 503 51.3
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 1.6e-126 456.8 374 55.6
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 3.6e-126 455.7 406 56.7
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 1.1e-125 454.1 389 59.6
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 4.0e-125 452.2 379 58.8
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 4.4e-124 448.7 377 59.9
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 7.0e-122 441.4 362 59.9
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 2.5e-119 433.0 392 55.4
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 3.3e-119 432.6 388 55.7
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 4.3e-119 432.2 388 56.2
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 6.2e-118 428.3 385 54.5
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 3.7e-115 419.1 376 54.5
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 7.1e-114 414.8 385 54.5
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 7.3e-111 404.8 383 56.1
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 8.4e-107 391.3 301 63.8
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 7.1e-106 388.3 501 45.5
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 3.1e-101 372.9 410 50.5
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 4.6e-97 359.0 334 54.8
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 5.3e-93 345.5 237 68.8
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 4.5e-92 342.4 315 56.2
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 1.9e-87 327.0 378 45.8
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 4.9e-83 312.4 383 45.4
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.1e-79 301.2 290 53.8
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 7.4e-79 298.5 374 42.5
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 2.0e-76 290.4 170 75.9
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 2.6e-76 290.0 218 63.3
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 6.1e-73 278.9 338 46.2
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 1.1e-71 274.6 241 58.5
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.9e-66 257.3 167 67.1
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 3.0e-64 250.0 238 52.9
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 1.1e-63 248.1 249 52.6
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 6.3e-62 242.3 145 72.4
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 1.8e-61 240.7 414 40.1
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 2.6e-60 236.9 140 74.3
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 4.4e-55 219.5 380 38.2
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 1.5e-52 211.1 386 36.5
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.7e-49 200.3 121 75.2
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 3.6e-49 199.9 561 27.5
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 4.7e-49 199.5 114 76.3
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 3.0e-48 196.8 162 63.0
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 2.6e-47 193.7 123 69.9
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 3.7e-46 189.9 126 69.8
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 8.2e-46 188.7 248 41.1
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 3.8e-43 179.9 275 41.5
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 3.2e-42 176.8 252 42.5
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 5.7e-39 166.0 180 50.6
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 3.8e-35 153.3 103 68.9
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 1.5e-34 151.4 442 27.6
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 5.5e-26 122.9 83 71.1
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 2.6e-23 114.0 124 47.6
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 1.7e-22 111.3 207 36.2
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 1.7e-22 111.3 207 36.2
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 6.3e-22 109.4 79 64.6
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 5.9e-20 102.8 446 24.4
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 7.8e-20 102.4 413 26.9
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 4.0e-16 90.1 181 38.7
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 1.5e-15 88.2 59 64.4
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 3.4e-15 87.0 51 72.5
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 9.8e-15 85.5 53 71.7
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 7.3e-10 69.3 40 77.5
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 8.9e-08 62.4 378 24.9
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 2.6e-07 60.8 31 71.0
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 4.4e-07 60.1 41 63.4
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 9.8e-07 58.9 29 82.8
TPR.G40727 Trifolium pratense HOM05D005790 ORTHO05D007464 1.7e-06 58.2 46 60.9
PSO764G0342 Papaver somniferum HOM05D003335 ORTHO05D003853 2.2e-06 57.8 157 26.8
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 2.9e-06 57.4 32 78.1
Actinidia20838 Actinidia chinensis HOM05D003335 ORTHO05D003853 3.7e-06 57.0 153 26.1
CSS0033617 Camellia sinensis var. sinensis HOM05D003335 ORTHO05D003853 3.7e-06 57.0 208 24.5
Gorai.005G199500 Gossypium raimondii HOM05D002561 ORTHO05D006466 3.7e-06 57.0 90 35.6
Gohir.A03G154700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 4.9e-06 56.6 90 34.4
PSO832G0093 Papaver somniferum HOM05D003335 ORTHO05D003853 4.9e-06 56.6 157 26.8
Gohir.D02G177700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 8.3e-06 55.8 90 34.4
TPR.G24009 Trifolium pratense HOM05D003335 ORTHO05D003853 8.3e-06 55.8 149 26.8


User provided reference genes

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