Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009581 Sechium edule HOM05D003128 ORTHO05D004333 2.1e-106 389.0 196 100.0
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 7.5e-80 300.8 186 79.0
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 1.1e-75 287.0 185 76.8
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 3.6e-74 282.0 185 73.0
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 4.7e-74 281.6 186 74.2
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 1.9e-70 269.6 232 62.5
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 4.6e-69 265.0 185 68.1
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 7.8e-69 264.2 185 68.1
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 3.9e-68 261.9 185 67.0
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 8.6e-68 260.8 185 67.6
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 1.1e-67 260.4 185 67.6
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 1.5e-67 260.0 185 67.0
Sc07g0006800 Simmondsia chinensis HOM05D003128 ORTHO05D004333 1.5e-67 260.0 185 67.0
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 1.5e-67 260.0 185 67.0
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 4.3e-67 258.5 185 66.5
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 4.3e-67 258.5 185 66.5
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 7.3e-67 257.7 185 67.6
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 9.5e-67 257.3 185 67.0
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 9.5e-67 257.3 185 67.0
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 9.5e-67 257.3 185 67.0
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 9.5e-67 257.3 185 67.6
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 1.2e-66 256.9 185 67.0
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 1.6e-66 256.5 185 64.9
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 1.6e-66 256.5 185 67.0
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 1.6e-66 256.5 185 67.0
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 2.1e-66 256.1 185 67.6
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 2.8e-66 255.8 185 65.9
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 4.7e-66 255.0 185 68.1
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 4.7e-66 255.0 185 65.9
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 4.7e-66 255.0 185 68.6
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 6.2e-66 254.6 186 67.7
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 6.2e-66 254.6 186 67.7
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 6.2e-66 254.6 185 67.0
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 8.1e-66 254.2 185 65.4
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 1.1e-65 253.8 185 65.4
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 1.4e-65 253.4 185 65.4
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 2.3e-65 252.7 185 65.9
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 3.1e-65 252.3 185 65.9
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 3.1e-65 252.3 185 68.6
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 4.0e-65 251.9 185 65.4
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 6.8e-65 251.1 185 66.5
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 1.2e-64 250.4 185 65.9
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 1.2e-64 250.4 185 64.3
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 2.0e-64 249.6 185 63.2
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 2.0e-64 249.6 185 63.2
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 2.0e-64 249.6 185 63.8
arahy.Tifrunner.gnm1.ann1.FV7J2W Arachis hypogaea HOM05D003128 ORTHO05D004333 2.6e-64 249.2 185 64.3
Manes.12G144101 Manihot esculenta HOM05D003128 ORTHO05D004333 2.6e-64 249.2 185 64.9
MELO3C007466.2 Cucumis melo HOM05D003128 ORTHO05D004333 3.4e-64 248.8 185 64.3
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 3.4e-64 248.8 185 64.3
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 4.4e-64 248.4 185 65.4
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 4.4e-64 248.4 185 67.0
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 5.8e-64 248.1 185 63.8
EL10Ac8g20519 Beta vulgaris HOM05D003128 ORTHO05D004333 7.5e-64 247.7 186 66.1
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 9.9e-64 247.3 185 63.2
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 1.3e-63 246.9 185 64.9
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 1.7e-63 246.5 185 64.3
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 2.2e-63 246.1 185 63.2
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 2.9e-63 245.7 185 64.3
EL10Ac8g20517 Beta vulgaris HOM05D003128 ORTHO05D004333 3.7e-63 245.4 187 65.8
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 3.7e-63 245.4 185 62.7
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 4.9e-63 245.0 185 62.7
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 1.4e-62 243.4 185 63.8
CSS0032353 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 2.4e-62 242.7 185 66.5
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 3.2e-62 242.3 185 64.3
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 4.1e-62 241.9 185 61.6
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 4.1e-62 241.9 185 62.7
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 4.1e-62 241.9 185 61.6
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 5.4e-62 241.5 185 62.2
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 7.1e-62 241.1 185 60.5
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 1.2e-61 240.4 185 62.2
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 2.1e-61 239.6 185 61.6
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 2.7e-61 239.2 185 62.2
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 3.5e-61 238.8 185 62.2
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 4.6e-61 238.4 185 60.0
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 4.6e-61 238.4 185 61.6
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 4.6e-61 238.4 185 64.3
Cpa.g.sc566.1 Carica papaya HOM05D003128 ORTHO05D004333 1.0e-60 237.3 185 61.6
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 1.0e-60 237.3 185 60.5
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 1.3e-60 236.9 185 60.5
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 2.3e-60 236.1 185 61.6
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 3.0e-60 235.7 185 61.1
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 3.0e-60 235.7 185 62.2
Actinidia04640 Actinidia chinensis HOM05D003128 ORTHO05D004333 3.9e-60 235.3 185 62.2
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 3.9e-60 235.3 185 60.0
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 3.9e-60 235.3 185 61.1
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 8.6e-60 234.2 185 60.0
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 1.9e-59 233.0 185 60.0
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 1.9e-59 233.0 184 62.0
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 1.9e-59 233.0 185 59.5
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 4.3e-59 231.9 185 60.0
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 7.3e-59 231.1 185 59.5
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 1.2e-58 230.3 185 59.5
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 1.2e-58 230.3 185 59.5
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 1.6e-58 229.9 185 59.5
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 1.6e-58 229.9 185 59.5
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 2.1e-58 229.6 185 60.0
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 2.1e-58 229.6 185 58.9
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 2.8e-58 229.2 185 60.0
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 2.8e-58 229.2 185 59.5
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 3.6e-58 228.8 185 58.4
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 3.6e-58 228.8 185 58.4
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.1e-57 227.3 185 59.5
HPP92_027495 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.8e-57 226.5 185 58.4
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 3.1e-57 225.7 185 58.4
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 3.1e-57 225.7 185 58.4
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 3.1e-57 225.7 185 57.8
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 4.0e-57 225.3 185 58.9
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 5.2e-57 224.9 185 56.2
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 5.2e-57 224.9 185 57.3
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 5.2e-57 224.9 229 55.5
unitig_37.g12839 Utricularia gibba HOM05D003128 ORTHO05D004333 6.8e-57 224.6 185 59.5
Aa31LG1G4460 Aethionema arabicum HOM05D003128 ORTHO05D004333 8.9e-57 224.2 185 57.8
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 8.9e-57 224.2 185 57.3
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 2.0e-56 223.0 185 57.3
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 2.0e-56 223.0 185 56.2
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 3.4e-56 222.2 185 57.3
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 4.4e-56 221.9 186 57.5
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 7.6e-56 221.1 185 61.1
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 9.9e-56 220.7 186 57.0
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 9.9e-56 220.7 186 57.0
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 9.9e-56 220.7 186 57.0
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 2.9e-55 219.2 187 57.2
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 4.9e-55 218.4 181 58.0
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 1.1e-54 217.2 186 56.5
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 1.4e-54 216.9 186 55.4
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 1.9e-54 216.5 185 58.4
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 5.4e-54 214.9 172 58.7
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 7.1e-54 214.5 184 57.6
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 1.2e-53 213.8 192 54.7
PGSC0003DMG400031195 Solanum tuberosum HOM05D003128 ORTHO05D004333 2.7e-53 212.6 168 58.9
CBR_g45300 Chara braunii HOM05D003128 ORTHO05D004333 2.3e-52 209.5 185 54.6
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 8.7e-52 207.6 200 55.0
ECA236G4711 Erigeron canadensis HOM05D003128 ORTHO05D004333 9.6e-51 204.1 186 57.5
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 2.6e-48 196.1 187 54.5
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 2.6e-48 196.1 187 54.5
Cre03.g192850 Chlamydomonas reinhardtii HOM05D003128 ORTHO05D004333 4.4e-48 195.3 189 52.9
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 4.4e-48 195.3 186 54.3
MCO04G276 Micromonas commoda HOM05D003128 ORTHO05D004333 9.9e-48 194.1 187 51.3
PRCOL_00004456 Prasinoderma coloniale HOM05D003128 ORTHO05D004333 2.1e-45 186.4 191 50.3
Haze_27374 Corylus avellana HOM05D003128 ORTHO05D004333 7.6e-40 167.9 153 54.9
CAN.G710.3 Capsicum annuum HOM05D003128 ORTHO05D004333 2.1e-37 159.8 141 54.6
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 1.3e-36 157.1 186 48.9
MBI01_g28993_MAGBIO Magnolia biondii HOM05D003128 ORTHO05D004333 1.5e-35 153.7 99 72.7
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 2.0e-32 143.3 132 55.3
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 2.9e-31 139.4 129 53.5
EL10Ac3g06887 Beta vulgaris HOM05D003128 ORTHO05D004333 1.5e-27 127.1 91 69.2
SHI09338 Sapria himalayana HOM05D000002 ORTHO05D000001 1.6e-26 123.6 86 68.6
FvH4_5g28550 Fragaria vesca HOM05D003128 ORTHO05D017009 1.2e-24 117.5 114 53.5
FAN12G2314 Fragaria x ananassa HOM05D003128 ORTHO05D017009 1.2e-24 117.5 114 53.5
FvH4_6g25830 Fragaria vesca HOM05D003128 ORTHO05D017009 5.8e-24 115.2 113 51.3
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 1.1e-22 110.9 95 58.9
FvH4_3g27400 Fragaria vesca HOM05D003128 ORTHO05D017009 1.9e-22 110.2 110 52.7
FvH4_6g25650 Fragaria vesca HOM05D003128 ORTHO05D017009 2.1e-21 106.7 111 47.7
SEGI_25321 Sequoiadendron giganteum HOM05D003128 ORTHO05D004333 1.0e-20 104.4 98 50.0
SHI45136 Sapria himalayana HOM05D003128 ORTHO05D004333 4.8e-10 68.9 45 66.7
SHI48834 Sapria himalayana HOM05D008459 ORTHO05D003903 8.2e-10 68.2 45 66.7
SHI39228 Sapria himalayana HOM05D003128 ORTHO05D000778 4.1e-09 65.9 45 62.2
Gohir.A11G182401 Gossypium hirsutum HOM05D003128 ORTHO05D017009 8.5e-07 58.2 52 53.8
Gohir.D07G214150 Gossypium hirsutum HOM05D003128 ORTHO05D017009 8.5e-07 58.2 52 53.8
Gohir.D13G012301 Gossypium hirsutum HOM05D003128 ORTHO05D017009 8.5e-07 58.2 52 53.8
Gorai.011G112600 Gossypium raimondii HOM05D003128 ORTHO05D017009 8.5e-07 58.2 52 53.8
COL.COLO4_10987 Corchorus olitorius HOM05D003128 ORTHO05D004333 4.2e-06 55.8 52 46.2


User provided reference genes

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