Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 3.6e-202 708.0 348 100.0
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 4.1e-161 571.6 347 82.7
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 2.4e-153 545.8 336 80.4
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 4.7e-117 425.2 385 58.7
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 1.4e-116 423.7 363 62.5
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 5.2e-116 421.8 348 61.2
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 2.0e-115 419.9 360 62.8
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 3.4e-115 419.1 360 59.4
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 4.4e-115 418.7 355 61.1
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 9.8e-115 417.5 362 58.8
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 9.8e-115 417.5 350 64.6
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.7e-114 415.6 345 64.1
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.3e-114 414.5 333 65.2
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 1.4e-113 413.7 353 61.2
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 2.4e-113 412.9 347 64.0
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 2.4e-113 412.9 344 63.1
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 3.1e-113 412.5 365 59.2
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 4.1e-113 412.1 380 58.4
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 7.0e-113 411.4 363 59.0
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.6e-112 410.2 333 61.9
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 5.9e-112 408.3 355 60.8
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.7e-111 406.8 344 62.5
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 2.9e-111 406.0 366 58.7
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 6.6e-111 404.8 356 58.1
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 8.6e-111 404.4 345 62.9
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.1e-110 404.1 373 59.5
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 1.9e-110 403.3 333 61.3
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 2.5e-110 402.9 368 59.0
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 4.3e-110 402.1 353 60.6
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 2.1e-109 399.8 362 57.7
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 4.7e-109 398.7 346 62.1
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 1.8e-108 396.7 343 60.3
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.3e-108 396.4 335 59.7
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 5.2e-108 395.2 346 60.7
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 6.8e-108 394.8 376 58.2
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 3.4e-107 392.5 369 58.3
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 3.4e-107 392.5 347 60.8
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 1.7e-106 390.2 360 58.1
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.1e-105 387.5 352 57.1
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 1.4e-105 387.1 352 59.7
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 2.4e-105 386.3 364 56.0
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 2.4e-105 386.3 357 56.9
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 3.2e-105 386.0 352 56.0
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 7.0e-105 384.8 352 59.4
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 2.0e-104 383.3 357 56.6
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 4.6e-104 382.1 357 55.2
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 2.3e-103 379.8 364 54.7
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 3.9e-103 379.0 342 58.5
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 3.9e-103 379.0 356 55.9
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 1.1e-102 377.5 359 54.9
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 1.5e-102 377.1 348 57.5
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.5e-102 377.1 357 56.6
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.9e-102 376.7 350 57.7
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.3e-102 375.9 350 56.6
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 3.3e-102 375.9 347 55.3
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 1.2e-101 374.0 364 57.4
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 2.8e-101 372.9 346 56.1
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 4.7e-101 372.1 357 54.3
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 8.0e-101 371.3 356 55.1
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 3.1e-100 369.4 357 56.3
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 5.2e-100 368.6 352 57.4
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 8.9e-100 367.9 360 56.4
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 1.5e-99 367.1 338 57.7
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 2.0e-99 366.7 344 55.5
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 3.4e-99 365.9 357 58.0
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 4.4e-99 365.5 395 50.9
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 5.8e-99 365.2 351 55.8
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.7e-98 363.6 351 53.6
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 2.2e-98 363.2 359 53.5
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.9e-98 362.8 369 53.9
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 4.9e-98 362.1 358 54.7
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 8.3e-98 361.3 366 54.6
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 1.1e-97 360.9 361 53.5
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.4e-97 360.5 350 55.4
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.4e-97 360.5 354 55.1
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 4.1e-97 359.0 352 54.0
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 5.4e-97 358.6 351 57.0
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 7.0e-97 358.2 354 55.1
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 7.0e-97 358.2 339 58.7
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 6.0e-96 355.1 372 53.5
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.5e-94 350.5 352 56.0
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 1.9e-94 350.1 360 53.1
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.7e-93 345.5 293 62.1
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 1.8e-92 343.6 376 50.8
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.1e-92 342.8 347 55.0
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.5e-91 340.5 300 57.3
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 3.2e-89 332.8 295 59.3
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 1.9e-86 323.6 382 51.8
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 3.6e-85 319.3 316 57.6
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 4.0e-84 315.8 336 48.8
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.5e-83 313.9 275 57.8
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 2.0e-83 313.5 253 64.0
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.6e-80 303.9 315 51.7
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 4.4e-75 285.8 341 46.9
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 4.4e-75 285.8 334 47.0
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.7e-74 283.9 279 58.1
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 1.0e-71 274.6 346 46.2
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 7.3e-70 268.5 332 49.4
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 4.8e-69 265.8 453 37.5
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 3.1e-68 263.1 427 39.6
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 6.9e-68 261.9 240 58.8
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 4.6e-64 249.2 452 37.8
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 1.3e-63 247.7 295 44.4
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 2.3e-63 246.9 198 63.6
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 2.1e-61 240.4 198 62.1
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 1.7e-58 230.7 160 70.0
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 1.5e-54 217.6 308 47.4
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 1.9e-54 217.2 333 42.0
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 4.8e-53 212.6 310 43.9
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 6.2e-53 212.2 153 66.0
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.6e-51 206.8 154 65.6
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 3.5e-48 196.4 163 60.1
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 3.9e-47 193.0 193 51.3
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 3.7e-45 186.4 300 40.7
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 6.9e-44 182.2 172 58.7
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 1.5e-43 181.0 196 51.5
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 1.7e-42 177.6 216 48.1
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 6.5e-42 175.6 173 51.4
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 3.7e-37 159.8 157 51.6
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 1.3e-34 151.4 414 31.2
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 3.2e-33 146.7 139 59.0
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 3.0e-31 140.2 395 29.9
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 1.5e-30 137.9 129 55.0
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 5.7e-30 136.0 131 57.3
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 6.3e-29 132.5 108 57.4
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 1.8e-28 131.0 92 73.9
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 2.9e-26 123.6 87 72.4
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 3.8e-26 123.2 96 69.8
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 4.2e-25 119.8 778 21.9
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 5.5e-25 119.4 104 58.7
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.0e-23 115.2 85 64.7
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.9e-23 113.2 149 45.0
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 1.4e-20 104.8 135 44.4
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 1.1e-17 95.1 61 67.2
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 1.6e-16 91.3 350 27.1
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 1.4e-15 88.2 304 27.3
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 3.3e-14 83.6 94 51.1
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 8.5e-10 68.9 297 25.6
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 6.8e-07 59.3 33 78.8


User provided reference genes

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