Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008895 Sechium edule HOM05D000183 ORTHO05D000100 3.0e-57 224.9 114 100.0
CsaV3_6G040320 Cucumis sativus L. HOM05D000183 ORTHO05D000100 7.3e-35 150.6 114 70.2
Sed0012131 Sechium edule HOM05D000183 ORTHO05D000100 4.7e-34 147.9 100 76.0
MELO3C024507.2 Cucumis melo HOM05D000183 ORTHO05D000100 1.1e-33 146.7 114 67.5
MD12G1100600 Malus domestica HOM05D000183 ORTHO05D000100 1.4e-22 109.8 126 46.8
ClCG10G019540 Citrullus lanatus HOM05D000183 ORTHO05D000100 7.1e-22 107.5 132 48.5
CsaV3_3G036660 Cucumis sativus L. HOM05D000183 ORTHO05D000100 9.3e-22 107.1 132 48.5
Prupe.7G121100 Prunus persica HOM05D000183 ORTHO05D000100 7.8e-21 104.0 126 47.6
Sed0021701 Sechium edule HOM05D000183 ORTHO05D000100 1.0e-20 103.6 131 48.1
Cfa016507 Carpinus fangiana HOM05D000183 ORTHO05D000100 3.0e-20 102.1 131 48.9
Duzib093G1736 Durio zibethinus HOM05D000183 ORTHO05D000100 3.0e-20 102.1 126 47.6
Duzib106G1522 Durio zibethinus HOM05D000183 ORTHO05D000100 5.1e-20 101.3 126 49.2
MELO3C009420.2 Cucumis melo HOM05D000183 ORTHO05D000100 6.6e-20 100.9 132 47.7
Thecc.05G078100 Theobroma cacao HOM05D000183 ORTHO05D000100 8.7e-20 100.5 126 47.6
RcHm_v2.0_Chr3g0471691 Rosa chinensis HOM05D000183 ORTHO05D000100 1.1e-19 100.1 127 48.0
Sed0013136 Sechium edule HOM05D000183 ORTHO05D000100 1.1e-19 100.1 126 46.8
Sed0024655 Sechium edule HOM05D000183 ORTHO05D000100 1.1e-19 100.1 123 48.8
Gorai.002G244200 Gossypium raimondii HOM05D000183 ORTHO05D000100 1.9e-19 99.4 128 46.9
Lj3A1007G29 Lonicera japonica HOM05D000183 ORTHO05D000100 3.3e-19 98.6 136 41.2
Gohir.A01G210880 Gossypium hirsutum HOM05D000183 ORTHO05D000100 4.3e-19 98.2 126 46.8
Gohir.D01G199600 Gossypium hirsutum HOM05D000183 ORTHO05D000100 4.3e-19 98.2 128 46.9
Lj3A1006G35 Lonicera japonica HOM05D000183 ORTHO05D000100 4.3e-19 98.2 137 40.9
MD14G1094700 Malus domestica HOM05D000183 ORTHO05D000100 4.3e-19 98.2 127 44.1
Manes.08G018300 Manihot esculenta HOM05D000183 ORTHO05D000100 7.3e-19 97.4 113 48.7
Potri.006G117700 Populus trichocarpa HOM05D000183 ORTHO05D000100 9.6e-19 97.1 123 46.3
Migut.J00491 Erythranthe guttata HOM05D000183 ORTHO05D000100 1.3e-18 96.7 98 52.0
Atru.chr8.1672 Acer truncatum HOM05D000183 ORTHO05D000100 1.6e-18 96.3 78 61.5
CiPaw.09G006700 Carya illinoinensis HOM05D000183 ORTHO05D000100 1.6e-18 96.3 136 44.9
CSS0015419 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 2.1e-18 95.9 123 43.9
CSS0017020 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 2.1e-18 95.9 123 43.9
Dinv35852 Davidia involucrata HOM05D000183 ORTHO05D000100 8.1e-18 94.0 128 43.8
Cc06_g04990 Coffea canephora HOM05D000183 ORTHO05D000100 1.8e-17 92.8 126 44.4
Oeu039844.1 Olea europaea HOM05D000183 ORTHO05D000100 2.4e-17 92.4 112 43.8
AUR62037903 Chenopodium quinoa HOM05D000183 ORTHO05D000100 3.1e-17 92.0 115 46.1
Phvul.007G224800 Phaseolus vulgaris HOM05D000183 ORTHO05D000100 4.0e-17 91.7 132 42.4
Sc20g0005920 Simmondsia chinensis HOM05D000183 ORTHO05D000100 5.3e-17 91.3 126 42.9
TAR633G0100 Trochodendron aralioides HOM05D000950 ORTHO05D000774 9.0e-17 90.5 127 46.5
VMungo0720G1038 Vigna mungo HOM05D000183 ORTHO05D000100 9.0e-17 90.5 131 42.0
AUR62040157 Chenopodium quinoa HOM05D000183 ORTHO05D000100 1.2e-16 90.1 115 45.2
Solyc09g008810.3 Solanum lycopersicum HOM05D000183 ORTHO05D000100 1.2e-16 90.1 135 43.7
Duzib128G0230 Durio zibethinus HOM05D000183 ORTHO05D000100 1.5e-16 89.7 128 43.8
SGA_v2.0_scaffold40G15439 Striga asiatica HOM05D000183 ORTHO05D000100 1.5e-16 89.7 112 43.8
Manes.09G061400 Manihot esculenta HOM05D000183 ORTHO05D000100 2.6e-16 89.0 123 44.7
SalBow3G2239 Salvia bowleyana HOM05D000183 ORTHO05D000100 3.4e-16 88.6 113 45.1
Lalb_Chr02g0155251 Lupinus albus HOM05D000183 ORTHO05D000100 4.5e-16 88.2 128 42.2
unitig_27.g25392 Utricularia gibba HOM05D000183 ORTHO05D000100 4.5e-16 88.2 86 55.8
FAN14G4370 Fragaria x ananassa HOM05D000183 ORTHO05D000100 7.6e-16 87.4 146 41.8
TWI53G0016 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 7.6e-16 87.4 123 44.7
GSVIVG01033744001 Vitis vinifera HOM05D000183 ORTHO05D000100 7.6e-16 87.4 124 41.1
Cpa.g.sc5.106 Carica papaya HOM05D000183 ORTHO05D000100 9.9e-16 87.0 131 43.5
Sopen09g003600 Solanum pennellii HOM05D000183 ORTHO05D000100 9.9e-16 87.0 115 45.2
unitig_899.g15212 Utricularia gibba HOM05D000183 ORTHO05D000100 9.9e-16 87.0 98 51.0
Dinv37378 Davidia involucrata HOM05D000183 ORTHO05D000100 1.3e-15 86.7 129 41.1
Glyma.13G149500 Glycine max HOM05D000183 ORTHO05D000100 1.3e-15 86.7 75 60.0
SalBow5G0010 Salvia bowleyana HOM05D000183 ORTHO05D000100 1.3e-15 86.7 117 41.0
unitig_20.g31263 Utricularia gibba HOM05D000183 ORTHO05D000100 1.3e-15 86.7 110 46.4
Peaxi162Scf02095g00009 Petunia axillaris HOM05D000183 ORTHO05D000100 1.7e-15 86.3 131 44.3
TWI74G1607 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 3.8e-15 85.1 74 60.8
PGSC0003DMG400002692 Solanum tuberosum HOM05D000183 ORTHO05D000100 1.1e-14 83.6 136 40.4
SGA_v2.0_scaffold75G24807 Striga asiatica HOM05D000183 ORTHO05D000100 1.1e-14 83.6 115 43.5
arahy.Tifrunner.gnm1.ann1.6RV3HL Arachis hypogaea HOM05D000183 ORTHO05D000100 1.9e-14 82.8 70 61.4
CSS0031322 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 1.9e-14 82.8 104 45.2
CSS0031495 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 1.9e-14 82.8 104 45.2
MSTRG.5795 Avicennia marina HOM05D000183 ORTHO05D000100 2.4e-14 82.4 115 42.6
Actinidia39866 Actinidia chinensis HOM05D000183 ORTHO05D000100 3.2e-14 82.0 136 41.9
unitig_578.g15775 Utricularia gibba HOM05D000183 ORTHO05D000100 3.2e-14 82.0 113 44.2
ECA233G3241 Erigeron canadensis HOM05D000183 ORTHO05D000100 4.2e-14 81.6 83 55.4
Lj5g0004999 Lotus japonicus HOM05D000183 ORTHO05D000100 4.2e-14 81.6 72 62.5
Nn2g13952 Nelumbo nucifera HOM05D000183 ORTHO05D000100 4.2e-14 81.6 116 41.4
CAN.G824.49 Capsicum annuum HOM05D000183 ORTHO05D000100 5.4e-14 81.3 72 58.3
Ciclev10012525m.g Citrus clementina HOM05D000183 ORTHO05D000100 5.4e-14 81.3 116 44.0
arahy.Tifrunner.gnm1.ann1.BC6QD1 Arachis hypogaea HOM05D000183 ORTHO05D000100 7.1e-14 80.9 82 53.7
COL.COLO4_22284 Corchorus olitorius HOM05D000183 ORTHO05D000100 7.1e-14 80.9 126 41.3
FvH4_6g17450 Fragaria vesca HOM05D000183 ORTHO05D000100 7.1e-14 80.9 127 44.1
FAN05G1555 Fragaria x ananassa HOM05D000183 ORTHO05D000100 7.1e-14 80.9 127 44.1
FAN09G0910 Fragaria x ananassa HOM05D000183 ORTHO05D000100 7.1e-14 80.9 127 44.1
FAN14G2028 Fragaria x ananassa HOM05D000183 ORTHO05D000100 7.1e-14 80.9 127 44.1
Sc07g0005340 Simmondsia chinensis HOM05D000183 ORTHO05D000100 7.1e-14 80.9 117 40.2
MSTRG.19215 Avicennia marina HOM05D000183 ORTHO05D000100 9.3e-14 80.5 115 40.9
MSTRG.26661 Avicennia marina HOM05D000183 ORTHO05D000100 9.3e-14 80.5 125 39.2
Nn6g35101 Nelumbo nucifera HOM05D000183 ORTHO05D000100 9.3e-14 80.5 128 42.2
Oeu017007.1 Olea europaea HOM05D000183 ORTHO05D000100 9.3e-14 80.5 115 40.9
unitig_8.g4957 Utricularia gibba HOM05D000183 ORTHO05D000100 1.2e-13 80.1 72 56.9
CANSAT80G0289 Cannabis sativa HOM05D000183 ORTHO05D000100 2.1e-13 79.3 136 39.0
ECA238G2609 Erigeron canadensis HOM05D000183 ORTHO05D000100 2.1e-13 79.3 101 46.5
FAN05G1252 Fragaria x ananassa HOM05D000183 ORTHO05D000100 2.1e-13 79.3 127 43.3
unitig_22.g5113 Utricularia gibba HOM05D000183 ORTHO05D000100 2.1e-13 79.3 89 52.8
Gorai.002G244000 Gossypium raimondii HOM05D000183 ORTHO05D000100 3.5e-13 78.6 71 57.7
Lj1g0025796 Lotus japonicus HOM05D000183 ORTHO05D000100 6.0e-13 77.8 79 53.2
PGR004G0575 Punica granatum HOM05D000183 ORTHO05D000100 6.0e-13 77.8 78 53.8
Actinidia11318 Actinidia chinensis HOM05D000183 ORTHO05D000100 7.9e-13 77.4 74 55.4
FAN02G2215 Fragaria x ananassa HOM05D000183 ORTHO05D000100 7.9e-13 77.4 115 44.3
Gohir.A01G210800 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.0e-12 77.0 120 40.8
Lsat_1_v5_gn_6_26681 Lactuca sativa HOM05D000183 ORTHO05D000100 1.0e-12 77.0 74 56.8
Gorai.009G409600 Gossypium raimondii HOM05D000183 ORTHO05D000100 5.1e-12 74.7 117 40.2
Ca_08952_v3 Cicer arietinum L. HOM05D000183 ORTHO05D000100 6.7e-12 74.3 135 38.5
Lsat_1_v5_gn_2_21861 Lactuca sativa HOM05D000183 ORTHO05D000100 8.7e-12 73.9 83 51.8
Actinidia32465 Actinidia chinensis HOM05D000183 ORTHO05D000100 1.9e-11 72.8 112 39.3
Gohir.A04G067100 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.9e-11 72.8 117 39.3
Sabra06G0092600 Salix brachista HOM05D000183 ORTHO05D000100 1.9e-11 72.8 122 39.3
Medtr7g103340 Medicago truncatula HOM05D000183 ORTHO05D000100 3.3e-11 72.0 77 50.6
arahy.Tifrunner.gnm1.ann1.5U6PUW Arachis hypogaea HOM05D000183 ORTHO05D000100 4.3e-11 71.6 87 49.4
arahy.Tifrunner.gnm1.ann1.9FH087 Arachis hypogaea HOM05D000183 ORTHO05D000100 4.3e-11 71.6 87 49.4
CDE08G1308 Ceratophyllum demersum HOM05D000183 ORTHO05D000100 5.6e-11 71.2 109 44.0
Nitab4.5_0000680g0100 Nicotiana tabacum HOM05D000183 ORTHO05D000100 1.3e-10 70.1 116 40.5
Nitab4.5_0012570g0020 Nicotiana tabacum HOM05D000183 ORTHO05D000100 1.3e-10 70.1 116 40.5
Oeu038882.1 Olea europaea HOM05D000183 ORTHO05D000100 1.3e-10 70.1 114 36.8
TAR623G0517 Trochodendron aralioides HOM05D000183 ORTHO05D000100 2.8e-10 68.9 112 40.2
Actinidia31300 Actinidia chinensis HOM05D000183 ORTHO05D000100 4.8e-10 68.2 63 54.0
CDE06G1537 Ceratophyllum demersum HOM05D000183 ORTHO05D000100 6.2e-10 67.8 108 40.7
Migut.L01740 Erythranthe guttata HOM05D000183 ORTHO05D000100 8.1e-10 67.4 72 51.4
unitig_8.g3559 Utricularia gibba HOM05D000183 ORTHO05D000100 1.1e-09 67.0 99 37.4
Eucgr.A01575 Eucalyptus grandis HOM05D000183 ORTHO05D000100 1.4e-09 66.6 70 50.0
QL07p041041 Quercus lobata HOM05D000183 ORTHO05D000100 1.4e-09 66.6 128 39.1
Psat0ss1870g0080 Pisum sativum HOM05D000183 ORTHO05D000100 2.4e-09 65.9 90 45.6
TPR.G5700 Trifolium pratense HOM05D000183 ORTHO05D000100 2.4e-09 65.9 98 40.8
unitig_8.g4134 Utricularia gibba HOM05D000183 ORTHO05D000100 2.4e-09 65.9 111 39.6
BolC4t22803H Brassica oleracea HOM05D000183 ORTHO05D000100 4.0e-09 65.1 64 50.0
unitig_8.g4387 Utricularia gibba HOM05D000183 ORTHO05D000100 6.9e-09 64.3 54 59.3
AT2G36610 Arabidopsis thaliana HOM05D000183 ORTHO05D000100 9.0e-09 63.9 49 59.2
EL10Ac7g16759 Beta vulgaris HOM05D000183 ORTHO05D000100 9.0e-09 63.9 122 37.7
BcaC02g11774 Brassica carinata HOM05D000183 ORTHO05D000100 9.0e-09 63.9 64 48.4
C04p11530 Brassica napus HOM05D000183 ORTHO05D000100 9.0e-09 63.9 64 48.4
CANSAT56G4258 Cannabis sativa HOM05D000183 ORTHO05D000100 9.0e-09 63.9 130 31.5
CARHR209500 Cardamine hirsuta HOM05D000183 ORTHO05D000100 9.0e-09 63.9 94 45.7
PSO063G3779 Papaver somniferum HOM05D000183 ORTHO05D000100 9.0e-09 63.9 73 53.4
Phvul.001G184800 Phaseolus vulgaris HOM05D000183 ORTHO05D000100 9.0e-09 63.9 90 41.1
THA.LOC104826937 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 9.0e-09 63.9 105 38.1
AT5G03790 Arabidopsis thaliana HOM05D000183 ORTHO05D000100 1.2e-08 63.5 118 39.8
BolC2t06116H Brassica oleracea HOM05D000183 ORTHO05D000100 1.2e-08 63.5 113 39.8
BraA02t04782Z Brassica rapa HOM05D000183 ORTHO05D000100 1.2e-08 63.5 113 39.8
Carub.0004s1843 Capsella rubella HOM05D000183 ORTHO05D000100 1.2e-08 63.5 52 55.8
AL4G32790 Arabidopsis lyrata HOM05D000183 ORTHO05D000100 2.0e-08 62.8 49 59.2
BraA05t19882Z Brassica rapa HOM05D000183 ORTHO05D000100 2.0e-08 62.8 57 54.4
DCAR_020787 Daucus carota HOM05D000183 ORTHO05D000100 2.0e-08 62.8 133 36.1
PSO339G0735 Papaver somniferum HOM05D000183 ORTHO05D000100 2.0e-08 62.8 73 52.1
A05p09260 Brassica napus HOM05D000183 ORTHO05D000100 2.6e-08 62.4 57 52.6
Glyma.10G064700 Glycine max HOM05D000183 ORTHO05D000100 3.4e-08 62.0 77 49.4
AL6G13340 Arabidopsis lyrata HOM05D000183 ORTHO05D000100 4.5e-08 61.6 101 41.6
BcaB02g09346 Brassica carinata HOM05D000183 ORTHO05D000100 4.5e-08 61.6 67 49.3
Psat3g036880 Pisum sativum HOM05D000183 ORTHO05D000100 4.5e-08 61.6 70 50.0
C09p73150 Brassica napus HOM05D000183 ORTHO05D000100 5.8e-08 61.2 107 35.5
Medtr1g061660 Medicago truncatula HOM05D000183 ORTHO05D000100 5.8e-08 61.2 133 35.3
BcaC03g12983 Brassica carinata HOM05D000183 ORTHO05D000100 7.6e-08 60.8 107 34.6
C02p01510 Brassica napus HOM05D000183 ORTHO05D000100 7.6e-08 60.8 113 38.9
CiPaw.10G003500 Carya illinoinensis HOM05D000183 ORTHO05D000100 7.6e-08 60.8 129 36.4
Ca_11608_v3 Cicer arietinum L. HOM05D000183 ORTHO05D000100 7.6e-08 60.8 125 36.0
Ca_12336_v3 Cicer arietinum L. HOM05D000183 ORTHO05D000100 7.6e-08 60.8 125 36.0
A10p32300 Brassica napus HOM05D000183 ORTHO05D000100 9.9e-08 60.5 107 36.4
BraA10t45273Z Brassica rapa HOM05D000183 ORTHO05D000100 9.9e-08 60.5 107 36.4
Carub.0006s0270 Capsella rubella HOM05D000183 ORTHO05D000100 9.9e-08 60.5 106 40.6
BolC3t12727H Brassica oleracea HOM05D000183 ORTHO05D000100 1.7e-07 59.7 98 36.7
BcaC06g32084 Brassica carinata HOM05D000183 ORTHO05D000100 2.2e-07 59.3 47 57.4
Thhalv10017567m.g Eutrema salsugineum HOM05D000183 ORTHO05D000100 2.2e-07 59.3 46 60.9
CARHR130890 Cardamine hirsuta HOM05D000183 ORTHO05D000100 3.8e-07 58.5 49 57.1
Thhalv10014547m.g Eutrema salsugineum HOM05D000183 ORTHO05D000100 3.8e-07 58.5 89 40.4
Sp6g38940 Schrenkiella parvula HOM05D000183 ORTHO05D000100 3.8e-07 58.5 114 37.7
BcaB05g21807 Brassica carinata HOM05D000183 ORTHO05D000100 4.9e-07 58.2 107 32.7
A03p01380 Brassica napus HOM05D000183 ORTHO05D000100 4.9e-07 58.2 95 40.0
C03p01720 Brassica napus HOM05D000183 ORTHO05D000100 4.9e-07 58.2 98 39.8
BraA03t09517Z Brassica rapa HOM05D000183 ORTHO05D000100 4.9e-07 58.2 95 40.0
Haze_19490 Corylus avellana HOM05D000183 ORTHO05D000100 4.9e-07 58.2 37 73.0
ATR0820G244 Amborella trichopoda HOM05D000183 ORTHO05D000100 6.4e-07 57.8 104 33.7
THA.LOC104827493 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 6.4e-07 57.8 46 60.9
Sp4g18890 Schrenkiella parvula HOM05D000183 ORTHO05D000100 1.1e-06 57.0 64 45.3
Aqoxy1G00991 Aquilegia oxysepala HOM05D000183 ORTHO05D000100 1.9e-06 56.2 129 34.1
BcaB01g05787 Brassica carinata HOM05D000183 ORTHO05D000100 3.2e-06 55.5 98 36.7
PSO675G1030 Papaver somniferum HOM05D000183 ORTHO05D000100 3.2e-06 55.5 64 48.4
PSO675G6148 Papaver somniferum HOM05D000183 ORTHO05D000100 4.2e-06 55.1 75 41.3
HanXRQChr13g0400071 Helianthus annuus HOM05D000183 ORTHO05D000100 5.5e-06 54.7 38 65.8
Phvul.001G184900 Phaseolus vulgaris HOM05D000183 ORTHO05D000100 5.5e-06 54.7 90 37.8
PSO541G2467 Papaver somniferum HOM05D000183 ORTHO05D000100 7.1e-06 54.3 92 38.0
PSO675G9235 Papaver somniferum HOM05D000183 ORTHO05D000100 7.1e-06 54.3 94 39.4


User provided reference genes

Program Settings