Gene: Sopen09g003600

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g003600
  • Transcript Identifier Sopen09g003600.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 2273113-2275927 : negative

Gene Family Information

  • ID HOM05D000183
  • #Genes/#Species 2094/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g003600.1

Descriptions

  • Description Encodes a homeodomain leucine zipper class I (HD-Zip I) meristem identity regulator that acts together with LFY to induce CAL expression. It binds to the CAL promoter proximal CAATNATTG element. LMI1 acts primarily downstream of LFY in meristem identity regulation. The interaction between LFY, LMI1 and CAL resembles a feed-forward loop transcriptional network motif. The gene also had additional LFY-independent roles in leaf morphogenesis and bract formation. | homeobox 51 (HB51) | FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: in 6 processes | LOCATED IN: nucleus | EXPRESSED IN: 14 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Homeobox, conserved site , Homeobox , Homeodomain-like , Helix-turn-helix motif, lambda-like repressor , Homeodomain-related | BEST Arabidopsis thaliana protein match is: homeobox protein 22
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0010582
ISO
PLAZA Integrative Orthologyfloral meristem determinacy AT5G03790
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT5G03790
GO:0048510
ISO
PLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phase AT5G03790
GO:0010434
ISO
PLAZA Integrative Orthologybract formation AT5G03790
GO:0009965
ISO
PLAZA Integrative Orthologyleaf morphogenesis AT5G03790

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043565
IEA
InterProsequence-specific DNA binding
GO:0003677
IEA
InterProDNA binding
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT2G36610

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003106 Leucine zipper, homeobox-associated
IPR000047 Helix-turn-helix motif
IPR001356 Homeobox domain
IPR009057 Homeobox-like domain superfamily
Mapman id Description
15.5.3.1 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP I/II)