Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.8e-196 689.1 356 100.0
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 1.8e-127 459.9 275 86.5
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 2.3e-127 459.5 272 85.7
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 5.1e-127 458.4 275 86.5
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 3.2e-113 412.5 275 77.5
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 1.1e-110 404.1 294 74.8
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 5.7e-110 401.7 275 76.4
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 1.7e-109 400.2 280 76.4
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 3.7e-109 399.1 277 77.6
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 3.7e-109 399.1 283 78.1
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 1.1e-108 397.5 282 77.0
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 6.9e-108 394.8 274 75.5
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 2.0e-107 393.3 280 75.4
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 2.0e-107 393.3 275 76.4
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 3.4e-107 392.5 269 79.2
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 5.9e-107 391.7 274 76.6
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 7.7e-107 391.3 278 75.9
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 1.0e-106 391.0 279 76.7
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-106 390.6 272 77.2
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 1.3e-106 390.6 276 76.1
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 1.7e-106 390.2 275 74.9
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 1.7e-106 390.2 275 74.9
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.2e-106 389.8 272 77.6
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 2.2e-106 389.8 275 77.1
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 2.9e-106 389.4 275 75.3
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 3.8e-106 389.0 272 76.5
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.5e-106 388.3 247 81.4
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 8.5e-106 387.9 272 77.2
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 8.5e-106 387.9 279 77.8
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 1.1e-105 387.5 274 74.8
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 1.4e-105 387.1 277 74.7
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 1.9e-105 386.7 276 73.9
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 2.5e-105 386.3 277 74.4
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 3.2e-105 386.0 281 73.3
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 3.2e-105 386.0 271 76.4
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 4.2e-105 385.6 255 80.0
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 4.2e-105 385.6 272 77.2
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 5.5e-105 385.2 274 76.6
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 9.4e-105 384.4 276 73.2
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.2e-104 384.0 272 76.8
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 1.2e-104 384.0 277 75.1
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 1.2e-104 384.0 276 73.2
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 1.6e-104 383.6 276 74.6
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 1.6e-104 383.6 276 74.6
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 1.6e-104 383.6 274 75.2
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 1.6e-104 383.6 248 81.5
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 2.1e-104 383.3 279 74.2
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 2.7e-104 382.9 277 75.8
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 6.1e-104 381.7 272 75.4
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 7.9e-104 381.3 272 75.7
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 7.9e-104 381.3 269 76.6
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 1.0e-103 380.9 250 79.6
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.0e-103 380.9 282 73.8
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 1.4e-103 380.6 280 76.1
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 1.4e-103 380.6 275 73.8
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.0e-103 379.4 273 74.7
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 3.0e-103 379.4 276 75.0
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 3.9e-103 379.0 275 74.2
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 3.9e-103 379.0 269 77.3
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 1.5e-102 377.1 278 72.3
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 3.3e-102 375.9 276 73.2
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 3.3e-102 375.9 274 74.1
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 5.7e-102 375.2 272 74.3
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 5.7e-102 375.2 280 75.4
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 5.7e-102 375.2 281 71.9
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 5.7e-102 375.2 281 71.9
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 5.7e-102 375.2 281 71.9
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 9.7e-102 374.4 274 74.5
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 9.7e-102 374.4 278 71.9
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 1.3e-101 374.0 276 72.8
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 1.3e-101 374.0 272 74.6
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.3e-101 374.0 257 78.6
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.7e-101 373.6 271 74.9
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 2.8e-101 372.9 274 73.4
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 2.8e-101 372.9 274 74.1
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 2.8e-101 372.9 275 73.5
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 3.7e-101 372.5 274 73.7
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 4.8e-101 372.1 278 72.3
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 6.3e-101 371.7 274 73.4
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 6.3e-101 371.7 274 73.4
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 6.3e-101 371.7 274 73.4
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 6.3e-101 371.7 274 73.4
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 6.3e-101 371.7 274 73.7
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 8.2e-101 371.3 272 75.7
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 1.4e-100 370.5 270 74.8
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 1.8e-100 370.2 272 73.5
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 1.8e-100 370.2 272 73.5
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 1.8e-100 370.2 272 73.5
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.8e-100 370.2 273 73.3
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 2.4e-100 369.8 272 73.5
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 2.4e-100 369.8 270 73.7
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.4e-100 369.8 274 71.5
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 2.4e-100 369.8 278 73.4
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 3.1e-100 369.4 274 71.5
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 4.1e-100 369.0 272 73.2
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 1.6e-99 367.1 274 73.0
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 2.0e-99 366.7 261 75.5
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 2.0e-99 366.7 272 72.8
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 2.0e-99 366.7 270 73.7
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 2.6e-99 366.3 246 78.9
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 3.5e-99 365.9 269 73.6
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 5.9e-99 365.2 271 74.5
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.3e-98 364.0 200 91.0
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 1.7e-98 363.6 273 74.7
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 1.7e-98 363.6 249 75.5
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 2.9e-98 362.8 273 72.9
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 3.8e-98 362.5 271 73.8
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 6.5e-98 361.7 274 71.2
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 8.5e-98 361.3 274 71.9
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 8.5e-98 361.3 283 71.4
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 4.2e-97 359.0 220 84.1
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 9.4e-97 357.8 275 72.0
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.2e-96 357.5 267 71.9
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 4.7e-96 355.5 272 68.8
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 6.1e-96 355.1 280 70.7
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.4e-95 354.0 220 83.2
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 2.5e-89 333.2 195 85.1
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 4.1e-84 315.8 227 70.5
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 1.0e-82 311.2 272 61.0
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 1.7e-82 310.5 199 77.4
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 3.8e-82 309.3 286 59.8
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.3e-79 300.1 171 88.3
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.8e-76 290.4 238 67.6
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 4.3e-65 252.7 195 70.3
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 9.5e-65 251.5 164 79.9
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 3.1e-63 246.5 136 91.9
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 1.3e-61 241.1 200 66.5
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 1.3e-61 241.1 192 72.4
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 4.9e-61 239.2 163 71.2
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 6.8e-55 218.8 167 65.9
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 1.7e-53 214.2 254 52.0
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 9.2e-44 181.8 148 72.3
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.1e-41 174.9 123 73.2
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 3.1e-39 166.8 200 54.5
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.5e-38 164.5 98 82.7
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.6e-35 154.5 183 49.7
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.6e-35 154.5 183 49.7
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.5e-22 109.8 83 74.7
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 6.4e-21 105.9 111 55.0
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 7.1e-12 75.9 183 31.1
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 2.7e-11 73.9 178 32.0
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.9e-09 67.8 38 84.2
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 9.6e-09 65.5 38 84.2
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 1.2e-06 58.5 60 48.3


User provided reference genes

Program Settings