Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 6.2e-166 587.4 301 100.0
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 9.3e-146 520.4 301 88.7
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 2.4e-125 452.6 313 78.9
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 1.9e-122 443.0 300 77.0
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 1.2e-121 440.3 302 76.2
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 1.2e-121 440.3 300 75.7
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 2.3e-120 436.0 320 73.1
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 5.1e-120 434.9 297 76.4
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 5.1e-120 434.9 299 75.3
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 1.1e-119 433.7 302 74.5
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 1.9e-119 433.0 303 75.2
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 2.5e-119 432.6 320 72.5
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 2.5e-119 432.6 301 76.1
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 5.7e-119 431.4 302 76.8
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 1.6e-118 429.9 296 76.7
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 2.2e-118 429.5 301 74.4
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 4.8e-118 428.3 302 75.2
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 6.3e-118 427.9 300 74.3
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 1.1e-117 427.2 300 74.7
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 1.4e-117 426.8 303 72.6
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.8e-117 426.4 300 73.7
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 4.1e-117 425.2 298 73.8
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 5.3e-117 424.9 300 73.3
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 1.5e-116 423.3 300 73.0
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 2.0e-116 422.9 300 74.0
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 5.9e-116 421.4 305 73.4
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 5.9e-116 421.4 300 73.0
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 1.0e-115 420.6 302 73.8
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 1.3e-115 420.2 325 70.2
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 1.7e-115 419.9 299 71.9
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 1.7e-115 419.9 299 71.9
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 2.2e-115 419.5 305 71.5
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 3.2e-114 415.6 302 72.2
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 4.2e-114 415.2 305 70.8
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 4.2e-114 415.2 300 73.0
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 1.2e-113 413.7 303 74.6
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 1.2e-113 413.7 301 72.4
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 2.7e-113 412.5 299 72.2
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 7.9e-113 411.0 299 72.6
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.0e-112 410.6 299 71.9
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 1.0e-112 410.6 298 72.1
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.8e-112 409.8 296 72.3
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 1.8e-112 409.8 335 66.6
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 1.8e-112 409.8 299 70.9
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 3.0e-112 409.1 301 71.8
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 3.9e-112 408.7 304 69.7
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 5.1e-112 408.3 365 62.7
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 6.7e-112 407.9 299 70.6
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 6.7e-112 407.9 304 71.4
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 8.8e-112 407.5 304 71.4
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 8.8e-112 407.5 299 72.6
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 8.8e-112 407.5 301 72.1
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 1.1e-111 407.1 304 69.4
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 1.5e-108 396.7 311 67.5
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 2.0e-108 396.4 297 69.4
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 5.9e-108 394.8 352 62.5
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 6.5e-107 391.3 302 69.5
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 1.1e-106 390.6 316 63.9
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.4e-106 390.2 299 69.2
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 2.5e-106 389.4 298 68.1
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 5.5e-106 388.3 301 68.8
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 2.1e-105 386.3 296 69.3
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 2.7e-105 386.0 280 72.1
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 3.6e-105 385.6 306 69.3
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 3.0e-104 382.5 280 71.1
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 6.7e-104 381.3 290 69.7
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.5e-103 380.2 367 58.6
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 3.3e-103 379.0 303 70.0
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 4.4e-103 378.6 294 68.7
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 4.4e-103 378.6 294 68.7
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 4.4e-103 378.6 254 78.0
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 1.7e-102 376.7 300 64.7
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 2.2e-102 376.3 294 67.7
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 4.8e-102 375.2 290 68.3
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 2.4e-101 372.9 297 66.3
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 3.1e-101 372.5 270 71.9
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 2.6e-100 369.4 300 66.3
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 2.6e-100 369.4 341 60.1
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 5.9e-100 368.2 254 76.4
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 1.3e-99 367.1 320 62.8
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 1.3e-99 367.1 255 74.1
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 1.4e-98 363.6 254 74.8
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 3.2e-98 362.5 257 72.8
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 7.2e-98 361.3 263 72.6
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 4.7e-97 358.6 257 74.3
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 3.9e-96 355.5 328 59.8
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 9.7e-95 350.9 278 69.1
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 1.8e-93 346.7 319 59.9
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 5.3e-93 345.1 289 65.1
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 4.5e-92 342.0 207 83.6
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 8.5e-91 337.8 368 55.4
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 5.5e-90 335.1 299 62.2
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 5.5e-90 335.1 225 74.7
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 5.5e-90 335.1 330 56.7
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 6.1e-89 331.6 212 78.3
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 1.0e-88 330.9 302 58.6
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.8e-88 330.1 291 61.9
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 9.7e-87 324.3 259 64.1
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.2e-86 323.2 253 70.0
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 2.2e-86 323.2 209 78.5
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 8.2e-86 321.2 298 61.7
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 8.2e-86 321.2 248 69.8
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 1.2e-84 317.4 293 60.4
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 2.0e-84 316.6 258 64.7
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.0e-83 314.3 304 59.5
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 5.0e-83 312.0 246 69.5
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 4.2e-82 308.9 303 58.4
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 2.1e-81 306.6 256 64.8
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.5e-79 300.4 301 57.1
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 3.4e-79 299.3 329 51.4
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 4.4e-79 298.9 244 66.0
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.4e-77 293.1 185 81.6
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 7.0e-77 291.6 270 60.4
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 3.3e-74 282.7 199 69.8
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 2.4e-69 266.5 165 82.4
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 9.2e-69 264.6 351 45.6
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 7.8e-68 261.5 290 51.4
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 1.7e-67 260.4 228 63.2
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.1e-66 257.7 226 58.8
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 8.0e-65 251.5 219 59.8
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 4.4e-63 245.7 155 82.6
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 2.9e-54 216.5 203 59.1
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 4.3e-50 202.6 155 65.8
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 1.6e-49 200.7 129 79.1
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 2.0e-31 140.6 125 59.2
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 1.1e-29 134.8 330 33.3
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 1.5e-26 124.4 305 30.5
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 3.0e-19 100.1 68 73.5
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 6.7e-19 99.0 329 29.8
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 9.9e-15 85.1 90 52.2
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 5.1e-11 72.8 57 63.2
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 3.3e-10 70.1 78 53.8
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 5.6e-10 69.3 89 48.3
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 7.4e-10 68.9 52 63.5
CDE04G0373 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.4e-08 64.7 45 75.6


User provided reference genes

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