Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 0.0e+00 1155.2 634 100.0
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 1.1e-292 1009.6 634 88.8
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 4.3e-292 1007.7 634 86.3
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 4.0e-290 1001.1 634 85.5
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 3.4e-265 918.3 635 78.7
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 9.6e-260 900.2 634 75.7
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 2.3e-253 879.0 634 73.3
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.5e-249 866.3 635 74.0
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.7e-248 862.8 633 75.4
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 4.9e-248 861.3 610 75.6
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 3.2e-247 858.6 619 74.8
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.6e-246 856.3 633 72.8
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 2.3e-245 852.4 634 70.7
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 8.7e-245 850.5 636 72.0
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 7.4e-244 847.4 634 70.5
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 2.1e-243 845.9 635 72.6
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 2.1e-243 845.9 636 73.6
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.1e-242 843.6 613 73.2
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 1.4e-242 843.2 635 73.5
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.0e-240 837.0 626 72.4
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 2.2e-240 835.9 626 71.2
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 3.8e-240 835.1 625 71.7
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 6.5e-240 834.3 636 71.5
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 6.5e-240 834.3 634 69.7
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 6.5e-240 834.3 625 71.7
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.5e-239 832.4 626 71.6
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 4.2e-239 831.6 634 71.1
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.2e-238 830.1 634 70.2
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 1.6e-238 829.7 516 88.0
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.1e-238 829.3 670 67.8
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.8e-237 826.2 650 69.2
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 2.3e-237 825.9 634 69.6
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.3e-236 821.6 638 68.3
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 2.2e-235 819.3 664 67.5
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.7e-235 818.5 638 68.2
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 4.8e-235 818.1 605 71.9
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 6.3e-235 817.8 634 68.5
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 8.2e-235 817.4 614 69.9
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 9.0e-234 813.9 634 68.1
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 9.0e-234 813.9 616 70.6
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.0e-233 812.8 610 71.3
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 2.6e-233 812.4 635 68.3
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.0e-232 810.4 635 68.3
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 1.7e-232 809.7 635 69.0
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 1.7e-232 809.7 634 70.0
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 1.7e-232 809.7 635 68.0
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 2.9e-232 808.9 622 71.9
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 5.0e-232 808.1 624 70.5
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 5.5e-231 804.7 632 67.7
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 5.5e-231 804.7 632 67.7
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 5.5e-231 804.7 632 67.7
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 5.5e-231 804.7 635 67.6
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 2.7e-230 802.4 635 67.9
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 3.6e-230 802.0 635 68.3
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 6.1e-230 801.2 625 69.8
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 1.4e-229 800.0 635 68.3
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.4e-229 800.0 613 69.5
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.8e-229 799.7 622 68.0
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.8e-229 799.7 634 67.5
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 3.0e-229 798.9 635 68.5
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 6.7e-229 797.7 635 69.0
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 8.8e-229 797.3 635 67.7
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.5e-228 796.6 616 67.5
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 2.6e-228 795.8 614 68.7
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 5.7e-228 794.7 634 67.8
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 7.4e-228 794.3 636 66.8
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 2.4e-226 789.3 611 69.2
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 2.6e-225 785.8 637 67.3
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 2.6e-225 785.8 624 68.8
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 3.4e-225 785.4 619 68.2
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 5.9e-225 784.6 634 66.9
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 5.9e-225 784.6 675 63.9
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.3e-224 783.5 603 70.3
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 1.7e-224 783.1 635 67.7
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.7e-224 783.1 635 67.7
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 6.5e-224 781.2 620 66.9
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 9.4e-223 777.3 622 67.0
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.6e-222 776.5 635 66.5
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 2.7e-222 775.8 635 65.8
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 2.7e-222 775.8 635 66.1
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.7e-222 775.8 635 66.1
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 2.7e-222 775.8 537 75.4
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 3.6e-222 775.4 646 65.0
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 4.7e-222 775.0 630 67.6
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.3e-221 772.7 635 66.1
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 3.0e-221 772.3 606 71.3
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 8.8e-221 770.8 638 65.8
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.7e-219 766.5 604 67.9
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.2e-219 766.1 615 66.5
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 5.3e-218 761.5 616 64.8
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 2.0e-217 759.6 697 61.4
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 3.8e-216 755.4 628 64.8
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 6.5e-216 754.6 634 68.5
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 2.3e-213 746.1 611 66.9
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 8.8e-213 744.2 543 70.7
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.6e-212 742.7 624 66.0
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 4.8e-211 738.4 632 63.4
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.4e-210 736.1 632 62.7
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 8.5e-208 727.6 504 75.6
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 7.2e-207 724.5 614 64.8
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 4.7e-206 721.8 635 62.7
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 8.0e-206 721.1 632 61.6
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.7e-203 713.4 631 65.5
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 2.4e-202 709.5 632 61.9
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 1.1e-199 700.7 616 61.9
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 7.2e-199 698.0 562 65.3
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 7.5e-196 688.0 640 61.2
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 4.5e-193 678.7 642 59.8
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 3.4e-188 662.5 613 59.9
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.3e-183 646.0 610 60.0
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 1.6e-182 643.7 508 68.3
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 6.2e-182 641.7 505 68.5
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 1.4e-181 640.6 622 58.8
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 6.8e-181 638.3 622 58.5
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 4.4e-180 635.6 484 70.2
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 6.2e-174 615.1 640 55.9
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 2.0e-172 610.1 497 66.0
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 1.7e-163 580.5 620 55.0
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 1.2e-156 557.8 425 70.1
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 1.6e-153 547.4 418 70.1
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 4.3e-151 539.3 413 71.4
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 1.8e-149 533.9 625 51.0
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 2.0e-148 530.4 518 57.1
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 2.1e-145 520.4 628 47.0
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 2.7e-145 520.0 451 62.1
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 8.1e-142 508.4 627 47.0
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 9.0e-141 505.0 449 62.1
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 6.9e-125 452.2 328 70.1
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 7.2e-122 442.2 409 58.9
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 1.1e-117 428.3 592 44.8
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 2.9e-115 420.2 417 55.9
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 6.5e-115 419.1 634 43.7
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.6e-111 407.1 299 73.9
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 9.4e-90 335.5 318 57.5
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 2.9e-75 287.3 325 54.2
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 1.5e-71 275.0 640 33.4
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 4.1e-69 266.9 224 61.6
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.5e-66 258.5 212 70.8
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 8.0e-65 252.7 188 68.1
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 8.3e-62 242.7 705 31.9
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 1.9e-61 241.5 209 60.3
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 9.5e-58 229.2 165 75.8
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 4.7e-57 226.9 203 59.6
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.3e-56 224.6 168 68.5
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 8.9e-56 222.6 174 69.5
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 2.1e-52 211.5 155 70.3
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 2.3e-51 208.0 155 70.3
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.9e-50 204.9 159 69.8
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 4.4e-47 193.7 614 30.3
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 3.8e-46 190.7 178 61.2
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 3.9e-43 180.6 178 58.4
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.9e-42 178.3 128 71.1
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 1.4e-40 172.2 174 57.5
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 1.8e-40 171.8 117 76.9
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.2e-36 159.1 136 68.4
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.0e-35 156.0 148 61.5
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 4.5e-31 140.6 187 46.0
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 5.4e-29 133.7 92 73.9
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 5.4e-29 133.7 92 73.9
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 5.4e-29 133.7 92 73.9
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 1.5e-26 125.6 90 73.3
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 2.1e-25 121.7 110 61.8
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.3e-22 112.5 100 61.0
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.0e-19 101.3 91 59.3
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.9e-18 98.6 94 53.2
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 1.3e-17 95.9 78 66.7
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 8.2e-17 93.2 52 84.6
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 4.5e-15 87.4 72 55.6
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 4.5e-15 87.4 120 46.7
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 1.3e-14 85.9 79 51.9
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.2e-14 85.1 105 44.8
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.2e-14 85.1 94 46.8
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 4.9e-14 84.0 61 68.9
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 1.1e-13 82.8 82 52.4
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.1e-13 82.8 62 67.7
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 7.9e-12 76.6 636 24.5
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.1e-11 73.9 49 73.5
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 5.3e-08 63.9 48 70.8
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 2.2e-06 58.5 47 55.3
Psat2g135600 Pisum sativum HOM05D003438 ORTHO05D004235 8.5e-06 56.6 59 47.5


User provided reference genes

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