Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 2011.9 1032 100.0
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1843.2 1043 91.2
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1830.1 1044 90.7
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1827.0 1044 90.8
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1684.5 1045 82.6
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1671.4 1038 82.7
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1669.8 1043 81.9
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1664.0 1036 82.6
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1658.7 1033 82.5
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1656.7 1033 82.4
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1652.9 1045 81.4
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1651.0 1037 81.2
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1650.2 1043 81.8
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1649.0 1039 81.6
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1645.9 1056 79.9
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1642.9 1056 79.8
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1642.5 1017 81.9
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1637.9 1037 80.1
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1634.4 1043 80.7
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1633.2 1049 80.1
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1629.4 1042 79.6
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1628.2 1050 79.2
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1625.9 1036 80.1
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1624.0 1056 78.9
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1622.4 1044 80.1
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1620.1 1055 80.0
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1619.8 1016 81.2
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1619.0 1045 78.8
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1618.6 1044 79.9
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1615.9 1048 78.9
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1614.0 1050 79.3
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1613.6 1043 78.9
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1613.2 1046 79.2
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1609.3 1040 78.7
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1609.3 1043 79.0
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1609.3 1044 79.7
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1605.1 1042 77.9
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1604.0 1055 78.6
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1603.2 1041 79.0
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1602.8 1040 78.3
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1602.4 1039 78.1
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1600.1 1043 78.1
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1598.9 1046 78.8
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1598.2 1077 76.9
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1597.8 1017 79.9
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1597.8 1039 78.9
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1595.5 1035 78.7
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1593.9 1040 77.4
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1593.6 1045 79.1
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1589.7 1046 77.5
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1589.3 1055 78.5
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1587.8 1050 77.9
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1581.2 1066 76.9
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1580.8 1049 77.4
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1574.3 1037 77.9
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1570.8 1019 78.2
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1569.3 1049 77.3
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1568.1 1047 77.3
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1567.7 1040 77.4
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1566.2 1036 77.7
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1562.0 1036 76.4
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1557.7 1045 76.8
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1557.0 1045 76.1
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1556.2 1043 77.6
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1555.4 1036 76.9
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1554.7 1078 75.0
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1554.3 1049 76.6
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1553.5 1047 75.7
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1553.1 1045 75.9
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1548.5 1045 75.6
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1543.9 1043 77.4
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1543.5 1043 77.4
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1542.7 1045 77.3
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1541.9 1053 76.4
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1540.4 1046 74.5
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1538.1 1044 74.6
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1535.4 1044 75.5
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1535.0 1043 75.0
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1534.6 1037 75.9
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1533.5 1034 75.5
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1531.5 1045 75.4
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1530.0 1031 75.8
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1529.6 1053 75.0
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1527.7 1052 74.5
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1527.7 1052 74.5
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1526.1 1027 76.3
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1522.7 1048 73.6
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1521.5 1087 74.3
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1520.8 1048 73.5
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1518.8 1045 74.4
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1518.1 1045 74.5
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1516.1 1083 74.3
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1511.5 1014 75.9
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1506.1 1046 73.1
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1503.8 1037 73.8
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1498.4 1148 69.3
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1495.7 1039 73.3
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1476.1 1015 74.1
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1466.1 1015 73.4
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1456.8 1056 72.1
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1412.1 1017 71.1
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1401.0 1040 71.5
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1382.9 1051 69.8
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1356.7 928 75.1
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1337.4 958 70.7
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1335.9 955 71.4
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1328.9 1041 67.8
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1313.1 1006 68.8
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1307.4 1026 67.7
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1300.4 1023 65.1
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1296.2 1028 66.7
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1212.6 819 74.7
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1123.2 1020 57.8
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1100.5 1015 58.2
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1090.9 758 76.3
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 2.0e-304 1049.3 1019 54.9
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.6e-301 1039.6 1026 54.6
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 4.4e-296 1021.5 706 72.1
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 2.2e-295 1019.2 622 85.4
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 3.1e-294 1015.4 706 72.1
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-288 996.5 1007 55.7
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 2.2e-271 939.5 1030 51.2
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 9.2e-270 934.1 616 76.8
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.8e-269 931.0 959 55.5
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.5e-264 916.8 1033 50.9
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-263 913.7 1023 50.7
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.1e-245 853.2 552 78.3
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 1.1e-243 847.4 479 89.6
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.3e-218 764.2 446 87.7
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 6.1e-205 718.8 1026 44.4
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 4.1e-193 679.5 437 78.3
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 6.3e-186 655.6 1012 41.0
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.6e-184 651.0 399 79.7
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 2.6e-179 633.6 384 84.1
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.4e-177 625.9 481 68.0
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 3.7e-170 603.2 511 60.1
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 8.9e-164 582.0 1040 36.6
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 7.8e-160 568.9 455 64.6
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 4.1e-145 520.0 412 63.6
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.6e-143 512.3 373 70.2
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-141 507.7 367 70.3
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-141 507.7 367 70.3
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.8e-139 499.6 372 71.0
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 8.7e-135 485.7 322 74.5
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 2.0e-131 474.6 504 55.2
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 5.8e-131 473.0 561 49.6
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 2.5e-126 457.6 586 46.9
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.5e-123 448.4 1076 31.9
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 3.7e-117 427.2 660 41.2
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 3.7e-109 400.6 276 72.1
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 6.3e-101 373.2 290 63.4
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 5.5e-89 333.6 195 85.1
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-84 319.3 510 41.8
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.7e-82 312.0 281 58.0
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.7e-74 285.4 418 45.2
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 6.5e-74 283.5 397 43.6
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 3.2e-73 281.2 529 35.2
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 3.6e-64 251.1 185 72.4
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.0e-62 245.4 230 57.8
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 8.3e-61 240.0 135 85.9
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.0e-58 230.7 301 46.8
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.8e-56 224.9 223 56.5
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 5.0e-50 204.1 162 69.1
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 6.2e-48 197.2 122 83.6
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 1.7e-45 189.1 137 66.4
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 7.0e-44 183.7 197 49.2
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 1.5e-41 176.0 143 66.4
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 9.2e-36 156.8 176 52.8
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 7.8e-35 153.7 202 44.1
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.9e-33 149.1 253 41.1
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.7e-32 144.4 119 64.7
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 2.5e-25 122.1 93 66.7
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 8.1e-24 117.1 91 62.6
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 3.4e-22 111.7 260 30.8
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 4.2e-12 78.2 66 60.6
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 5.4e-12 77.8 72 48.6
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 5.4e-12 77.8 62 62.9
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.4e-12 77.8 55 72.7
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 6.7e-10 70.9 69 49.3
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 1.9e-09 69.3 49 65.3


User provided reference genes

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