Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 2.8e-94 348.6 176 100.0
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 4.8e-86 321.2 178 91.0
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 9.1e-85 317.0 178 89.3
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 8.5e-75 283.9 175 79.4
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 1.2e-73 280.0 177 79.1
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.7e-73 278.9 180 78.9
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 4.7e-73 278.1 182 77.5
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 6.1e-73 277.7 177 78.5
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.0e-72 276.9 178 79.2
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 6.8e-72 274.2 176 77.8
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 5.7e-71 271.2 178 76.4
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 5.7e-71 271.2 179 78.2
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 7.5e-71 270.8 178 78.1
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 9.8e-71 270.4 178 79.2
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.7e-70 269.6 178 77.0
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.7e-70 269.6 178 77.0
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 2.2e-70 269.2 178 77.0
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 6.3e-70 267.7 180 75.6
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 8.3e-70 267.3 180 76.1
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.1e-69 266.9 178 75.8
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.1e-69 266.9 175 77.1
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.4e-69 266.5 180 76.1
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.8e-69 266.2 182 75.8
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.8e-69 266.2 182 75.8
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.8e-69 266.2 177 76.3
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 3.1e-69 265.4 179 78.8
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 4.1e-69 265.0 176 76.1
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 4.1e-69 265.0 179 77.1
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 4.1e-69 265.0 172 77.9
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 5.4e-69 264.6 178 75.3
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 5.4e-69 264.6 177 74.6
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 7.0e-69 264.2 180 73.9
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 9.1e-69 263.8 179 76.0
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.6e-68 263.1 179 74.3
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 2.0e-68 262.7 178 75.3
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.0e-68 262.7 177 75.7
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 2.7e-68 262.3 175 74.9
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 2.7e-68 262.3 182 73.1
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 3.5e-68 261.9 177 74.6
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 5.9e-68 261.2 178 75.8
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 5.9e-68 261.2 184 75.5
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 5.9e-68 261.2 178 74.7
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 5.0e-67 258.1 177 74.6
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 8.6e-67 257.3 171 76.6
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 8.6e-67 257.3 176 76.1
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 8.6e-67 257.3 176 75.0
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 1.1e-66 256.9 178 74.2
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.1e-66 256.9 178 77.5
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.1e-66 256.9 176 74.4
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 3.2e-66 255.4 178 75.3
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 7.2e-66 254.2 176 75.0
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 7.2e-66 254.2 177 73.4
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.2e-65 253.4 176 73.3
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 2.1e-65 252.7 176 75.0
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 2.1e-65 252.7 182 70.9
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 2.8e-65 252.3 180 73.3
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.8e-65 252.3 176 74.4
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 2.8e-65 252.3 175 73.1
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 3.6e-65 251.9 178 73.6
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 4.7e-65 251.5 177 72.3
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 1.0e-64 250.4 176 71.0
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.0e-64 250.4 176 72.7
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.8e-64 249.6 178 73.6
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 1.8e-64 249.6 179 70.4
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 2.3e-64 249.2 169 75.7
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 6.8e-64 247.7 179 70.4
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 6.8e-64 247.7 183 72.1
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 8.8e-64 247.3 183 72.1
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 2.0e-63 246.1 178 72.5
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 2.0e-63 246.1 178 70.8
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 2.0e-63 246.1 178 71.3
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.4e-63 245.4 194 68.0
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 4.4e-63 245.0 178 70.8
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 3.7e-62 241.9 178 71.3
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 8.3e-62 240.7 178 70.8
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 8.3e-62 240.7 178 71.3
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 8.3e-62 240.7 206 62.6
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 8.3e-62 240.7 174 71.8
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 8.3e-62 240.7 178 69.1
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 1.8e-61 239.6 177 73.4
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 2.4e-61 239.2 178 70.2
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 3.1e-61 238.8 180 72.2
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 3.1e-61 238.8 180 72.2
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 3.1e-61 238.8 179 70.9
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 3.1e-61 238.8 179 70.9
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 3.1e-61 238.8 179 70.9
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 3.1e-61 238.8 179 70.9
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 7.0e-61 237.7 169 72.2
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 2.0e-60 236.1 216 58.3
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.0e-60 236.1 180 67.2
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 3.5e-60 235.3 178 69.7
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 5.9e-60 234.6 180 67.2
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 2.3e-59 232.6 177 70.6
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 2.9e-59 232.3 173 71.1
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.6e-58 228.0 157 74.5
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 5.6e-58 228.0 178 69.1
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 9.5e-58 227.3 180 67.8
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 1.6e-57 226.5 172 69.2
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 4.7e-57 224.9 179 68.7
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 1.8e-56 223.0 151 76.8
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 2.3e-56 222.6 185 63.8
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 3.0e-56 222.2 181 65.2
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 4.0e-56 221.9 168 69.6
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.2e-55 220.3 208 58.7
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 1.5e-55 219.9 176 69.3
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 2.6e-55 219.2 175 68.0
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 3.4e-55 218.8 176 64.8
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 5.7e-55 218.0 155 73.5
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 4.9e-54 214.9 143 75.5
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 4.9e-54 214.9 176 65.9
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 3.2e-53 212.2 190 62.6
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 3.2e-53 212.2 170 68.2
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 4.1e-53 211.8 136 79.4
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 5.4e-53 211.5 183 63.4
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 7.0e-53 211.1 188 62.8
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.2e-52 210.3 175 64.0
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 4.6e-52 208.4 131 79.4
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 4.6e-52 208.4 131 80.2
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 4.6e-52 208.4 131 79.4
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 7.8e-52 207.6 185 61.1
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.0e-51 207.2 134 79.9
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.3e-51 206.8 178 62.9
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.7e-51 206.5 180 65.6
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 5.0e-51 204.9 116 87.9
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 5.0e-51 204.9 116 87.1
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 8.6e-51 204.1 181 66.3
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 4.3e-50 201.8 139 71.9
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 5.6e-50 201.4 171 60.2
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 7.3e-50 201.1 171 60.8
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 2.8e-49 199.1 119 84.0
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 3.6e-49 198.7 154 65.6
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 4.7e-49 198.4 154 65.6
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 6.2e-49 198.0 115 85.2
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 8.0e-49 197.6 137 78.8
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.1e-48 197.2 165 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 5.2e-48 194.9 167 62.9
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 5.8e-47 191.4 136 74.3
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 7.5e-47 191.0 115 82.6
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.3e-46 190.3 136 73.5
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.7e-46 189.9 136 73.5
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 4.9e-46 188.3 115 78.3
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 9.2e-45 184.1 186 55.4
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 9.2e-45 184.1 115 79.1
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 4.3e-42 175.3 184 56.5
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 4.7e-41 171.8 185 55.7
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.4e-40 170.2 185 53.5
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 5.2e-40 168.3 180 53.3
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 9.9e-39 164.1 183 51.9
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.3e-38 163.7 116 68.1
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.3e-38 163.7 138 60.1
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.3e-35 153.7 159 52.8
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 3.0e-35 152.5 149 56.4
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 6.6e-35 151.4 114 65.8
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.5e-34 149.4 111 69.4
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.3e-34 149.1 177 46.9
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 4.7e-33 145.2 118 59.3
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 6.2e-33 144.8 123 65.0
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.5e-31 140.2 94 77.7
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 2.0e-31 139.8 161 51.6
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.4e-29 132.9 105 60.0
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-28 130.6 77 84.4
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 4.9e-22 108.6 123 50.4
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 8.4e-22 107.8 123 50.4
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.4e-21 107.1 59 88.1
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 5.4e-21 105.1 75 68.0
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 7.1e-21 104.8 59 88.1
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.7e-20 102.8 59 86.4
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 8.1e-17 91.3 57 77.2
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 1.1e-16 90.9 58 75.9
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.4e-16 90.5 54 79.6
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 2.4e-16 89.7 58 74.1
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 1.6e-12 77.0 114 35.1
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 4.6e-12 75.5 79 48.1
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 6.0e-12 75.1 97 50.5
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 1.3e-11 73.9 38 89.5
Cfa023258 Carpinus fangiana HOM05D003917 ORTHO05D126232 3.3e-10 69.3 110 31.8
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 6.9e-08 61.6 51 58.8
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 1.2e-07 60.8 51 58.8
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 5.8e-07 58.5 37 73.0
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 1.7e-06 57.0 51 54.9


User provided reference genes

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