Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 2.1e-233 812.0 414 100.0
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 2.3e-187 659.1 355 93.5
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 1.1e-176 623.6 359 86.4
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 1.9e-173 612.8 355 85.9
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 6.7e-171 604.4 355 84.2
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 4.3e-170 601.7 355 83.4
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 2.4e-168 595.9 355 84.2
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 1.2e-167 593.6 355 83.4
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 1.9e-165 586.3 355 81.4
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 2.5e-165 585.9 356 82.3
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 4.2e-165 585.1 355 82.0
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 4.2e-165 585.1 356 83.1
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 4.2e-165 585.1 356 83.1
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 5.5e-165 584.7 355 80.8
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 5.5e-165 584.7 355 82.3
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 2.7e-164 582.4 355 81.7
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 2.7e-164 582.4 372 79.6
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 3.6e-164 582.0 355 82.8
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 6.1e-164 581.3 384 76.8
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 1.0e-163 580.5 355 81.7
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 3.9e-163 578.6 357 80.1
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 3.3e-162 575.5 355 80.6
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 4.4e-162 575.1 355 79.7
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 4.8e-161 571.6 356 80.1
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 4.8e-161 571.6 355 79.4
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 1.4e-160 570.1 355 80.3
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 4.1e-160 568.5 356 78.9
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 4.1e-160 568.5 357 80.4
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 5.3e-160 568.2 355 80.0
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 5.3e-160 568.2 355 80.3
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 7.0e-160 567.8 355 79.4
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 1.6e-159 566.6 355 78.6
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 1.6e-159 566.6 355 78.6
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 1.6e-159 566.6 356 78.4
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 1.6e-159 566.6 356 78.4
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 2.0e-159 566.2 355 79.7
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 4.5e-159 565.1 355 79.2
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 4.5e-159 565.1 355 78.9
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 4.5e-159 565.1 355 78.9
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 5.9e-159 564.7 355 79.4
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 5.9e-159 564.7 355 78.9
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 1.3e-158 563.5 355 78.9
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 3.8e-158 562.0 355 79.2
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 6.5e-158 561.2 355 78.0
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 6.5e-158 561.2 355 78.3
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 6.5e-158 561.2 355 78.0
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 8.5e-158 560.8 379 74.7
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 1.1e-157 560.5 355 78.0
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.9e-157 559.7 361 77.6
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 2.5e-157 559.3 367 80.1
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 3.2e-157 558.9 357 78.4
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 3.2e-157 558.9 356 78.1
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 3.2e-157 558.9 355 77.5
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 3.2e-157 558.9 355 78.3
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 4.2e-157 558.5 356 78.7
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 5.5e-157 558.1 357 77.6
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 9.4e-157 557.4 356 78.1
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.6e-156 556.6 355 77.5
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 2.7e-156 555.8 355 77.7
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 2.7e-156 555.8 355 77.5
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 8.0e-156 554.3 355 77.5
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 8.8e-155 550.8 356 78.1
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 3.3e-154 548.9 360 77.8
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 4.4e-154 548.5 342 79.2
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 5.7e-154 548.1 355 77.5
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 5.7e-154 548.1 385 73.5
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 2.8e-153 545.8 334 82.0
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 6.3e-153 544.7 345 78.0
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 1.1e-152 543.9 380 73.4
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 2.4e-152 542.7 325 82.8
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 5.3e-152 541.6 355 74.1
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 1.3e-150 537.0 356 75.6
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 1.3e-150 537.0 397 69.3
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 2.2e-150 536.2 381 70.1
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 9.4e-149 530.8 355 71.8
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 2.8e-145 519.2 355 71.0
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 8.3e-145 517.7 316 80.1
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 8.3e-145 517.7 387 69.3
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 9.1e-144 514.2 359 73.0
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.3e-142 510.4 459 60.6
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 1.3e-142 510.4 376 70.7
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 4.2e-141 505.4 358 72.1
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.7e-137 493.4 318 75.5
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 6.3e-137 491.5 439 61.0
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 8.3e-137 491.1 342 73.4
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 1.8e-136 490.0 358 69.8
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 6.6e-134 481.5 296 81.8
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 2.4e-128 463.0 393 63.6
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 7.0e-128 461.5 296 77.7
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 1.6e-127 460.3 305 76.7
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 1.6e-127 460.3 432 58.8
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 7.3e-125 451.4 310 72.6
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 9.5e-125 451.1 395 61.5
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 3.7e-121 439.1 355 67.9
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 3.2e-120 436.0 294 73.8
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 1.0e-118 431.0 355 64.2
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 3.4e-114 416.0 352 63.9
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 9.2e-112 407.9 268 74.6
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 3.1e-107 392.9 242 78.9
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 1.2e-106 391.0 360 51.9
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 8.1e-100 368.2 319 60.5
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.2e-98 364.4 230 78.3
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 7.6e-98 361.7 360 50.0
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 3.3e-93 346.3 205 82.9
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 9.6e-93 344.7 361 49.0
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 2.8e-92 343.2 332 57.2
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 1.2e-87 327.8 407 46.4
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 1.4e-80 304.3 352 46.6
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 4.6e-79 299.3 352 45.2
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.9e-73 280.0 242 64.0
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 8.4e-73 278.5 186 73.7
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 1.0e-62 245.0 148 80.4
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 4.3e-61 239.6 330 46.4
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 1.2e-58 231.5 325 45.2
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.4e-54 218.0 177 65.0
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 1.2e-47 194.9 108 89.8
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 2.0e-45 187.6 361 34.3
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 1.7e-44 184.5 366 31.7
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 7.0e-43 179.1 231 47.6
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 9.7e-37 158.7 424 28.8
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 7.0e-35 152.5 80 92.5
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 2.7e-34 150.6 132 54.5
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.7e-34 150.6 118 63.6
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 1.1e-32 145.2 111 68.5
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 5.2e-30 136.3 456 25.4
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 3.8e-25 120.2 70 82.9
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 1.2e-23 115.2 69 79.7
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.6e-23 114.8 69 79.7
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 5.2e-22 109.8 60 85.0
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.7e-20 104.8 81 58.0
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 1.6e-15 88.2 178 38.2
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 6.8e-14 82.8 51 76.5
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 4.4e-13 80.1 52 75.0
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 7.5e-13 79.3 58 60.3
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 2.2e-12 77.8 57 64.9
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 1.4e-11 75.1 69 60.9
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 3.0e-09 67.4 90 46.7
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.6e-07 60.5 38 71.1
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 4.0e-06 57.0 36 72.2


User provided reference genes

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