Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 6.6e-126 454.1 243 100.0
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 3.1e-115 418.7 241 91.7
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 2.6e-114 415.6 241 90.9
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.2e-108 396.7 241 87.6
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 2.6e-98 362.5 240 79.2
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 4.4e-98 361.7 237 78.5
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 7.6e-98 360.9 240 77.5
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 5.4e-96 354.8 239 76.6
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.1e-94 348.2 240 75.4
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 5.6e-93 344.7 240 77.5
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 7.3e-93 344.4 239 76.6
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 2.1e-92 342.8 239 77.0
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 4.8e-92 341.7 239 76.2
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 4.8e-92 341.7 244 75.0
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 9.0e-91 337.4 238 75.6
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 9.0e-91 337.4 240 73.8
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.2e-90 337.0 251 74.5
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.5e-90 336.7 240 75.4
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.0e-90 336.3 240 74.2
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 2.0e-90 336.3 244 71.3
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.6e-90 335.9 239 73.6
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 5.8e-90 334.7 239 74.5
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 7.6e-90 334.3 240 73.3
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 9.9e-90 334.0 240 72.5
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 1.7e-89 333.2 239 74.5
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 2.2e-89 332.8 238 74.8
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 2.9e-89 332.4 239 75.3
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 2.9e-89 332.4 242 71.1
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 3.8e-89 332.0 239 74.5
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 3.8e-89 332.0 239 74.5
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 3.8e-89 332.0 240 72.9
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 4.9e-89 331.6 239 74.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 6.4e-89 331.3 239 74.9
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 8.4e-89 330.9 240 72.1
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 2.4e-88 329.3 240 74.2
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.4e-88 329.3 240 74.6
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 2.4e-88 329.3 238 75.2
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 2.4e-88 329.3 240 72.1
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 3.2e-88 328.9 240 70.8
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.2e-88 328.9 240 73.8
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 3.2e-88 328.9 232 73.3
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 4.2e-88 328.6 239 74.5
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 5.4e-88 328.2 240 74.2
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 7.1e-88 327.8 240 72.1
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 9.3e-88 327.4 208 81.2
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 9.3e-88 327.4 238 73.5
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 9.3e-88 327.4 240 72.9
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.2e-87 327.0 240 73.8
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.6e-87 326.6 240 71.2
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.6e-87 326.6 241 69.7
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.6e-87 326.6 240 72.1
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.6e-87 326.6 238 73.5
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 2.1e-87 326.2 240 72.5
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 2.1e-87 326.2 240 72.5
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 2.1e-87 326.2 240 72.9
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 2.1e-87 326.2 240 71.7
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.1e-87 326.2 240 73.8
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 2.1e-87 326.2 240 72.9
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.1e-87 326.2 240 71.7
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 2.7e-87 325.9 239 74.5
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 4.6e-87 325.1 238 74.4
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 7.9e-87 324.3 240 71.2
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 1.3e-86 323.6 232 74.1
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.3e-86 322.8 240 70.8
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 3.9e-86 322.0 239 71.5
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 6.7e-86 321.2 240 72.9
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.9e-85 319.7 241 68.9
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.9e-85 319.7 240 68.8
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 2.5e-85 319.3 228 73.7
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 4.3e-85 318.5 242 70.2
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 7.4e-85 317.8 240 71.2
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 9.6e-85 317.4 244 72.1
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 9.6e-85 317.4 241 69.3
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 9.6e-85 317.4 241 69.3
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.3e-84 317.0 243 70.8
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.6e-84 316.6 242 69.4
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.8e-84 315.8 228 73.7
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 4.8e-84 315.1 243 70.4
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 4.8e-84 315.1 243 71.2
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.8e-84 315.1 242 66.5
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 4.8e-84 315.1 241 68.5
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 8.1e-84 314.3 244 71.3
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.8e-83 313.2 240 67.9
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 2.4e-83 312.8 243 71.2
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 9.0e-83 310.8 232 71.6
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.0e-82 309.7 240 69.2
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 2.0e-82 309.7 240 67.5
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 2.0e-82 309.7 240 69.6
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 2.0e-82 309.7 240 68.3
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.6e-82 309.3 195 81.5
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 3.4e-82 308.9 206 79.1
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 4.5e-82 308.5 240 67.1
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 5.8e-82 308.1 243 70.4
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.3e-81 307.0 196 80.6
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 1.7e-81 306.6 240 68.3
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.7e-81 306.6 240 68.8
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 2.2e-81 306.2 240 67.5
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.9e-81 305.8 240 67.1
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.9e-81 305.8 241 68.0
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.9e-81 305.8 204 77.0
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 3.8e-81 305.4 198 78.3
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 4.9e-81 305.1 229 71.6
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 6.4e-81 304.7 242 69.4
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 1.9e-80 303.1 236 66.9
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 1.9e-80 303.1 204 77.0
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 4.2e-80 302.0 243 67.9
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 7.1e-80 301.2 197 78.2
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 1.2e-79 300.4 215 73.0
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 1.2e-79 300.4 215 73.0
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.6e-79 300.1 227 69.2
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 2.7e-79 299.3 215 73.0
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 2.7e-79 299.3 215 73.0
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 1.3e-78 297.0 240 67.1
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 2.8e-76 289.3 240 65.4
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 2.4e-75 286.2 240 65.4
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 5.3e-75 285.0 241 66.0
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.5e-74 283.5 181 79.6
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 3.2e-72 275.8 208 68.8
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 2.1e-71 273.1 240 62.9
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 7.9e-71 271.2 240 60.0
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 3.0e-70 269.2 241 58.9
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.5e-69 266.9 227 63.0
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 2.2e-68 263.1 228 61.4
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.7e-68 262.3 178 74.7
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 6.5e-65 251.5 228 58.8
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 6.3e-60 235.0 156 77.6
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 5.9e-58 228.4 226 61.1
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 4.2e-56 222.2 241 53.1
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 1.2e-55 220.7 191 62.8
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 4.1e-51 205.7 170 68.2
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 5.7e-45 185.3 130 72.3
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 4.1e-43 179.1 109 79.8
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 4.5e-42 175.6 239 50.6
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 5.2e-38 162.2 174 49.4
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 8.8e-38 161.4 102 79.4
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 1.7e-36 157.1 171 49.1
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.5e-29 134.0 130 56.2
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 2.2e-28 130.2 188 39.9
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.9e-24 117.1 86 64.0
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.3e-22 110.2 90 70.0
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.1e-19 101.3 89 67.4
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.7e-17 94.0 189 31.7
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 5.2e-14 82.4 53 75.5
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 3.7e-12 76.3 220 27.3
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 9.2e-11 71.6 80 56.2
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 1.3e-09 67.8 82 52.4
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 9.5e-08 61.6 62 58.1
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 1.1e-06 58.2 54 59.3


User provided reference genes

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