Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 0.0e+00 1702.2 1021 100.0
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 0.0e+00 1387.1 1023 81.2
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 0.0e+00 1376.7 1021 79.9
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 0.0e+00 1321.6 1013 78.1
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 0.0e+00 1318.1 1016 78.5
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 2.4e-286 989.2 1028 64.3
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 2.2e-284 982.6 1025 62.0
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 3.2e-283 978.8 1034 60.5
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 6.3e-279 964.5 1029 63.2
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 5.9e-277 958.0 1030 61.8
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 8.5e-276 954.1 1028 60.2
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 5.5e-275 951.4 1021 61.1
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 1.6e-274 949.9 1031 59.3
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 4.0e-273 945.3 1021 59.9
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 7.5e-272 941.0 1019 58.6
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 9.7e-272 940.6 1036 59.9
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 2.8e-271 939.1 1026 60.8
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 2.2e-268 929.5 1066 56.8
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 1.2e-266 923.7 1040 58.6
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 4.7e-266 921.8 1187 54.3
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 8.0e-266 921.0 1040 59.0
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 5.7e-264 914.8 1022 59.7
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 2.2e-263 912.9 1077 58.8
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 2.2e-263 912.9 1022 59.9
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 1.1e-262 910.6 1030 58.0
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 1.4e-262 910.2 1028 61.3
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 2.4e-262 909.4 1024 59.6
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 7.0e-262 907.9 1054 58.3
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 7.0e-262 907.9 1020 58.9
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.7e-261 906.0 1044 58.0
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 3.5e-261 905.6 1028 58.1
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 5.9e-261 904.8 1032 57.1
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 1.0e-260 904.0 1023 60.5
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.9e-260 902.5 1042 58.1
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 1.5e-259 900.2 1032 58.1
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 2.5e-259 899.4 1060 57.7
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 2.5e-259 899.4 1061 58.4
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 5.5e-259 898.3 1021 60.2
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.6e-258 896.7 1028 59.7
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 2.8e-258 896.0 1021 58.3
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 3.6e-258 895.6 1034 58.0
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 4.0e-257 892.1 1042 57.4
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 8.8e-257 891.0 1032 57.0
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 8.8e-257 891.0 1024 59.6
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 3.4e-256 889.0 1027 58.6
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 4.4e-256 888.6 1021 59.3
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 5.7e-256 888.3 1014 59.9
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 1.3e-255 887.1 1027 58.7
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.4e-254 883.6 1012 58.4
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 5.4e-254 881.7 1025 59.3
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 7.8e-253 877.9 1027 57.0
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 1.3e-252 877.1 737 70.7
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.3e-252 877.1 1025 57.9
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 1.7e-252 876.7 1042 58.4
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 6.6e-252 874.8 1019 58.4
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 9.5e-251 870.9 1040 57.0
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 2.8e-250 869.4 1030 57.2
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 4.0e-249 865.5 1019 58.7
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 5.2e-249 865.1 1047 56.8
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 8.9e-249 864.4 1018 55.2
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 4.9e-247 858.6 1049 53.0
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 3.2e-246 855.9 1035 55.6
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 4.1e-246 855.5 1028 57.5
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 9.2e-246 854.4 1063 55.6
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 9.2e-246 854.4 1046 56.4
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 4.6e-245 852.0 1023 58.7
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 3.0e-244 849.4 1028 55.5
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 5.0e-244 848.6 1021 55.0
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 8.6e-244 847.8 1023 54.6
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.1e-243 847.4 1019 56.3
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.5e-243 847.0 1034 56.5
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 4.3e-243 845.5 1042 55.4
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 1.6e-242 843.6 1025 55.8
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 2.1e-242 843.2 1027 54.4
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.4e-241 840.5 1054 52.7
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 1.4e-241 840.5 1020 55.4
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 4.0e-241 839.0 1023 56.4
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 5.2e-241 838.6 1017 55.0
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 4.4e-240 835.5 1094 52.1
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 9.8e-240 834.3 1031 56.5
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 9.8e-240 834.3 1033 56.2
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 3.7e-239 832.4 1051 55.3
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 4.9e-239 832.0 1016 54.9
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 1.2e-237 827.4 1058 54.3
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 2.7e-237 826.2 1041 55.7
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 1.7e-236 823.5 1057 53.6
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 1.5e-235 820.5 1035 55.4
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 2.5e-235 819.7 1025 55.2
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 9.5e-235 817.8 1028 56.9
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 3.6e-234 815.8 1145 49.3
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 6.2e-234 815.1 1047 53.7
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 2.0e-232 810.1 1012 54.2
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 5.8e-232 808.5 1021 53.9
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 4.9e-231 805.4 1023 55.5
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 7.8e-229 798.1 1054 52.8
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 3.0e-228 796.2 999 54.8
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 1.5e-227 793.9 1050 53.9
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 5.6e-227 792.0 1165 48.4
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 3.1e-225 786.2 1054 51.9
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 8.9e-225 784.6 1025 52.4
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 5.8e-224 781.9 1065 51.6
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 7.6e-224 781.6 1025 52.3
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 2.2e-223 780.0 1041 52.0
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 9.2e-222 774.6 1059 51.8
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 1.2e-221 774.2 1031 55.6
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 2.1e-221 773.5 1019 55.2
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 3.9e-220 769.2 1017 52.6
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 2.4e-217 760.0 1058 50.9
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 1.7e-215 753.8 1025 52.7
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 6.2e-210 735.3 1025 51.7
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 1.2e-208 731.1 1030 51.7
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 4.9e-207 725.7 1023 51.4
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 1.1e-206 724.5 1020 51.0
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.2e-205 721.1 1022 51.9
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 1.9e-195 687.2 1050 47.6
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 6.2e-194 682.2 1055 50.0
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 1.1e-190 671.4 1053 48.1
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 1.7e-178 630.9 1030 46.8
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 4.1e-177 626.3 1122 42.6
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 2.2e-170 604.0 486 74.1
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 8.0e-157 558.9 1032 41.8
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 7.0e-153 545.8 932 45.5
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 1.3e-151 541.6 1028 42.4
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 2.0e-147 527.7 555 64.1
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.6e-141 508.1 718 52.9
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 6.8e-140 502.7 815 47.1
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 7.3e-118 429.5 982 39.0
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 2.4e-100 371.3 391 58.6
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 9.6e-94 349.4 1045 32.7
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 7.9e-64 250.0 550 40.4
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 2.3e-63 248.4 429 43.1
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 2.2e-53 215.3 346 46.2
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 7.2e-49 200.3 315 50.8
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 6.1e-48 197.2 169 67.5
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 3.9e-47 194.5 207 57.5
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 2.6e-43 181.8 137 76.6
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 1.4e-39 169.5 322 40.1
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 1.8e-39 169.1 596 32.7
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 7.7e-35 153.7 365 39.7
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 8.5e-34 150.2 429 38.2
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 2.7e-32 145.2 88 88.6
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 4.7e-32 144.4 121 72.7
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.8e-31 142.5 245 43.7
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 6.8e-31 140.6 90 85.6
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 1.2e-30 139.8 477 30.8
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 2.8e-29 135.2 513 30.4
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 3.5e-27 128.3 170 51.8
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 3.8e-26 124.8 83 79.5
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 1.1e-25 123.2 481 30.4
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.2e-24 119.8 102 67.6
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 2.3e-23 115.5 99 69.7
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 3.4e-22 111.7 83 68.7
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 1.3e-21 109.8 427 30.9
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 1.3e-21 109.8 67 88.1
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 2.8e-21 108.6 253 36.4
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 3.7e-21 108.2 645 27.0
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 2.4e-20 105.5 583 29.0
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 7.0e-20 104.0 158 49.4
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 2.0e-19 102.4 63 87.3
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 7.8e-19 100.5 81 71.6
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 2.1e-16 92.4 645 25.0
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 4.0e-15 88.2 74 68.9
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 8.9e-15 87.0 62 74.2
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 8.9e-15 87.0 175 41.7
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 1.2e-14 86.7 80 60.0
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 2.0e-14 85.9 88 62.5
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 2.0e-14 85.9 93 60.2
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 3.4e-14 85.1 358 27.4
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 5.8e-14 84.3 58 81.0
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 1.3e-13 83.2 62 74.2
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 1.3e-13 83.2 62 74.2
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.4e-12 79.7 89 58.4
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 2.0e-11 75.9 88 58.0
MELO3C027912.2 Cucumis melo HOM05D000030 ORTHO05D000031 2.1e-08 65.9 39 79.5
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 2.8e-08 65.5 71 59.2
EL10Ac6g13433 Beta vulgaris HOM05D000200 ORTHO05D000262 2.3e-07 62.4 44 68.2
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 4.0e-07 61.6 79 49.4
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 4.0e-07 61.6 228 31.6
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 2.0e-06 59.3 45 66.7


User provided reference genes

Program Settings