Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 0.0e+00 2090.8 1051 100.0
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 0.0e+00 1577.4 1056 77.1
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 0.0e+00 1498.8 1056 74.5
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 0.0e+00 1431.0 1056 71.4
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 0.0e+00 1295.4 1058 66.9
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 3.1e-172 610.1 1084 39.4
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 5.1e-167 592.8 1133 38.3
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 3.2e-161 573.5 1133 37.0
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 1.1e-156 558.5 1118 36.6
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 1.0e-154 552.0 1130 36.3
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.2e-154 550.8 1087 37.4
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 9.4e-153 545.4 1099 37.7
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.6e-152 544.7 1125 36.7
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 1.8e-151 541.2 1084 38.0
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.0e-150 537.7 1161 35.7
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 3.8e-146 523.5 1110 37.1
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.1e-145 521.9 1152 35.6
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 3.2e-145 520.4 1119 36.3
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 5.5e-145 519.6 1087 35.3
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.4e-143 515.0 1117 35.7
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 5.2e-143 513.1 1088 35.1
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.2e-141 507.7 1107 36.2
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 2.2e-141 507.7 1089 36.3
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.5e-137 495.0 1116 35.6
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 9.4e-137 492.3 1100 34.7
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 5.2e-135 486.5 1044 35.2
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 5.2e-135 486.5 1099 34.0
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 8.6e-130 469.2 1103 34.5
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 5.7e-126 456.4 1118 33.2
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 6.6e-122 443.0 1100 33.2
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 8.6e-122 442.6 1053 34.0
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 1.0e-119 435.6 1093 33.7
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 4.1e-116 423.7 1103 32.5
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.0e-114 419.1 1100 32.1
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.7e-114 418.3 1107 32.1
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 2.3e-114 417.9 1106 32.7
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 2.3e-114 417.9 1116 33.0
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 8.6e-114 416.0 1116 31.6
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 8.6e-114 416.0 1148 31.9
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 9.5e-113 412.5 1077 32.3
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.8e-112 411.0 1121 31.1
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 4.7e-112 410.2 1101 32.3
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 5.2e-111 406.8 1089 33.5
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 2.6e-110 404.4 1129 32.4
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 3.4e-110 404.1 1072 33.6
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.3e-109 402.1 1174 31.6
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.9e-109 401.0 1072 33.8
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 1.9e-108 398.3 1063 32.1
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 3.5e-107 394.0 1096 32.4
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 4.6e-107 393.7 1071 32.5
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.0e-106 392.5 1089 31.7
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 5.0e-106 390.2 1088 32.8
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 7.3e-105 386.3 1128 30.9
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 4.0e-103 380.6 1099 30.0
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 6.8e-103 379.8 1064 31.9
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 1.7e-101 375.2 1129 30.9
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.2e-101 374.8 882 34.7
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.9e-101 374.4 1076 30.9
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 6.0e-99 366.7 1118 30.9
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 1.7e-98 365.2 1083 30.7
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 2.3e-98 364.8 571 40.5
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 2.5e-97 361.3 1068 30.2
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 5.6e-97 360.1 1063 31.2
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.6e-96 358.6 822 35.3
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 2.4e-95 354.8 1117 31.0
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 3.1e-95 354.4 1107 31.3
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 3.2e-92 344.4 1094 30.6
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 2.7e-91 341.3 1144 30.0
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 6.6e-90 336.7 1088 30.1
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 3.3e-89 334.3 1087 30.0
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 4.3e-89 334.0 1068 30.7
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 3.6e-88 330.9 1176 27.9
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 8.1e-88 329.7 1101 29.8
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.9e-85 321.2 1066 29.2
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 7.3e-81 306.6 1022 30.2
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 2.1e-80 305.1 1061 28.7
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 4.8e-80 303.9 1070 29.0
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 5.4e-76 290.4 1080 29.2
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 1.3e-72 279.3 1055 28.0
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.1e-71 276.2 1073 28.1
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 1.4e-71 275.8 735 33.3
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.1e-71 274.6 1062 26.9
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 1.9e-68 265.4 756 30.7
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 3.5e-67 261.2 1067 28.3
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 7.9e-67 260.0 516 37.2
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 6.9e-63 246.9 707 30.8
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 2.6e-62 245.0 842 30.4
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 3.4e-62 244.6 843 30.7
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 5.8e-62 243.8 843 30.2
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 5.8e-62 243.8 742 31.0
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 4.9e-61 240.7 742 30.9
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 3.4e-54 218.0 784 29.5
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 4.6e-51 207.6 700 31.0
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 4.1e-47 194.5 786 28.5
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 5.9e-46 190.7 462 32.3
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 3.8e-45 188.0 964 25.6
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.2e-43 183.0 333 35.1
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.0e-42 178.3 519 30.3
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 3.9e-42 177.9 1132 24.8
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 2.0e-41 175.6 249 42.2
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 7.7e-38 163.7 754 27.3
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 9.4e-36 156.8 667 27.1
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.7e-35 154.5 403 33.0
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 1.4e-34 152.9 308 33.8
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.2e-32 145.6 153 49.7
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 4.8e-32 144.4 726 24.9
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 5.3e-31 141.0 786 27.0
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 1.2e-30 139.8 776 26.9
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.6e-30 139.4 493 31.0
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 1.6e-30 139.4 780 26.5
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 5.9e-30 137.5 775 27.1
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 7.7e-30 137.1 1029 23.4
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 5.0e-29 134.4 332 31.9
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.2e-25 123.2 137 50.4
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 4.4e-25 121.3 129 47.3
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 7.5e-25 120.6 338 28.7
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 4.8e-24 117.9 156 42.9
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 6.3e-24 117.5 131 45.8
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 3.1e-23 115.2 116 51.7
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 3.1e-23 115.2 520 30.2
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 5.3e-23 114.4 129 46.5
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 9.1e-23 113.6 143 45.5
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 1.6e-22 112.8 227 38.3
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.0e-22 112.5 1052 23.3
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 2.7e-22 112.1 161 40.4
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.7e-21 109.4 139 41.0
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 5.5e-20 104.4 126 44.4
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 3.6e-19 101.7 1014 21.5
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.4e-18 99.8 754 25.5
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.4e-18 99.8 286 29.0
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 6.8e-18 97.4 308 28.9
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.0e-17 95.9 306 28.8
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 3.4e-17 95.1 135 42.2
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 2.2e-16 92.4 449 26.3
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 3.5e-14 85.1 448 25.2
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 7.7e-14 84.0 58 65.5
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 3.8e-13 81.6 102 45.1
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 3.6e-11 75.1 411 24.8
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 8.9e-10 70.5 411 24.8
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 2.2e-08 65.9 64 48.4
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 1.2e-06 60.1 60 50.0
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.2e-06 60.1 409 24.4
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 7.8e-06 57.4 104 37.5


User provided reference genes

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