Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 0.0e+00 1456.8 754 100.0
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 0.0e+00 1260.4 792 82.8
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 0.0e+00 1245.7 756 84.9
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1131.3 751 77.0
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1129.4 751 76.8
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 0.0e+00 1122.1 751 76.0
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 0.0e+00 1112.4 744 75.5
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 0.0e+00 1106.7 748 75.0
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 0.0e+00 1098.2 749 75.3
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1097.0 751 74.6
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 0.0e+00 1090.9 754 73.9
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 0.0e+00 1090.9 750 74.3
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 0.0e+00 1089.3 755 74.4
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 0.0e+00 1089.3 749 74.1
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 0.0e+00 1089.3 749 74.4
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 0.0e+00 1089.3 751 74.7
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1088.2 751 74.3
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 0.0e+00 1087.0 757 74.1
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1084.3 760 73.4
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 0.0e+00 1076.2 751 74.7
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 0.0e+00 1075.1 754 72.5
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.5e-311 1072.4 752 73.1
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 2.1e-311 1072.0 755 72.5
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 1.0e-310 1069.7 751 74.4
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 2.3e-310 1068.5 748 72.9
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 1.1e-309 1066.2 749 72.9
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 1.9e-309 1065.4 756 72.5
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 3.3e-309 1064.7 748 74.3
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 4.3e-309 1064.3 753 72.6
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 2.1e-308 1062.0 756 72.2
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 2.1e-308 1062.0 759 73.1
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 2.1e-308 1062.0 750 72.1
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 6.2e-308 1060.4 756 72.0
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 1.1e-307 1059.7 759 72.1
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 1.4e-307 1059.3 753 72.2
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 3.1e-307 1058.1 754 72.0
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 1.2e-306 1056.2 750 72.3
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 3.4e-306 1054.7 750 72.0
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 5.8e-306 1053.9 757 71.1
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 1.3e-305 1052.7 745 72.3
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.7e-305 1052.4 757 71.1
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 1.1e-304 1049.7 750 71.2
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 1.9e-304 1048.9 796 69.1
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 5.5e-304 1047.3 761 71.9
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 7.1e-304 1047.0 741 72.1
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 779 69.7
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 1.0e-302 1043.1 760 71.6
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 1.0e-302 1043.1 749 70.6
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 1.3e-302 1042.7 749 70.8
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 1.8e-302 1042.3 755 70.7
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 8.7e-302 1040.0 755 71.4
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 2.5e-301 1038.5 758 70.4
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 4.3e-301 1037.7 755 71.1
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 9.6e-301 1036.6 762 70.5
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 9.6e-301 1036.6 753 70.3
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 2.8e-300 1035.0 755 71.4
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 1.8e-299 1032.3 763 70.5
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 9.0e-299 1030.0 790 67.6
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 4.5e-298 1027.7 753 71.0
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 5.8e-298 1027.3 780 68.3
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 1.3e-297 1026.2 758 70.4
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.3e-297 1026.2 769 68.9
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.7e-297 1025.8 752 70.7
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 7.1e-296 1020.4 752 69.9
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 7.1e-296 1020.4 755 68.2
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 1.6e-295 1019.2 750 70.0
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 2.1e-295 1018.8 748 69.4
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 2.7e-295 1018.5 753 69.6
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 4.6e-295 1017.7 752 70.9
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 6.0e-295 1017.3 755 69.9
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 7.9e-295 1016.9 754 69.4
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 3.0e-294 1015.0 756 69.6
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 5.1e-294 1014.2 753 69.9
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 8.7e-294 1013.4 749 69.8
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 1.5e-293 1012.7 749 69.7
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 8.2e-292 1006.9 752 70.1
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 4.1e-291 1004.6 752 69.8
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 5.3e-291 1004.2 743 68.9
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 9.0e-291 1003.4 740 69.9
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 1.0e-289 1000.0 752 69.4
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 1.3e-289 999.6 700 73.6
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 1.0e-286 989.9 748 67.1
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 1.4e-286 989.6 748 67.9
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 9.1e-283 976.9 711 71.4
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.1e-280 969.9 656 74.2
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 3.0e-278 961.8 746 68.2
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.5e-277 959.5 698 69.9
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 3.7e-276 954.9 755 66.4
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 5.0e-273 944.5 707 67.9
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 1.8e-270 936.0 655 73.9
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 3.0e-270 935.3 660 72.0
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 6.7e-262 907.5 832 57.9
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 1.5e-248 863.2 749 58.7
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 4.5e-242 841.6 751 58.9
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.3e-233 812.8 717 61.6
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.9e-232 809.7 538 76.0
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 4.6e-218 761.9 509 77.0
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 1.3e-217 760.4 553 71.1
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 4.3e-216 755.4 556 71.2
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 1.2e-215 753.8 605 66.1
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 8.7e-209 731.1 696 60.5
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.3e-188 664.1 517 69.2
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 1.9e-184 650.2 619 55.3
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 4.3e-168 595.9 444 67.6
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 2.9e-164 583.2 463 67.4
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 4.7e-162 575.9 433 68.4
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.2e-151 540.4 449 63.5
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 3.1e-150 536.6 501 61.7
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 1.1e-142 511.5 434 61.1
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 3.1e-142 510.0 432 60.4
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 4.4e-136 489.6 417 62.1
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 7.2e-131 472.2 399 62.2
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 1.2e-120 438.3 354 63.6
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 2.2e-119 434.1 354 63.3
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 9.9e-104 382.1 222 83.8
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 1.1e-94 352.1 267 70.4
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 4.6e-93 346.7 258 68.6
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 2.1e-69 268.1 230 61.3
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 4.1e-65 253.8 160 79.4
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 2.6e-64 251.1 168 72.6
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 4.3e-59 233.8 139 83.5
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.4e-52 212.2 295 45.1
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.9e-52 210.7 131 77.9
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.5e-51 208.8 141 71.6
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 2.2e-50 204.9 156 66.0
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 1.4e-44 185.7 312 42.0
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 3.0e-44 184.5 240 44.6
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 2.0e-43 181.8 105 83.8
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 3.1e-41 174.5 97 84.5
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 1.9e-38 165.2 292 36.6
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 1.1e-35 156.0 124 64.5
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 3.3e-35 154.5 132 63.6
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 3.7e-34 151.0 159 47.8
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 1.1e-33 149.4 81 88.9
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.2e-32 146.0 142 50.0
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.3e-26 125.9 86 76.7
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 1.3e-23 115.9 182 44.0
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 1.1e-22 112.8 103 52.4
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 6.8e-20 103.6 141 49.6
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 6.8e-20 103.6 71 73.2
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 2.7e-16 91.7 58 69.0
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 4.5e-16 90.9 53 86.8
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 5.9e-16 90.5 79 59.5
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 2.9e-15 88.2 58 65.5
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 2.8e-13 81.6 125 36.8
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 3.0e-12 78.2 52 75.0
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 5.2e-12 77.4 73 54.8
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 1.2e-11 76.3 44 79.5
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 4.4e-11 74.3 93 47.3
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 7.0e-09 67.0 36 94.4
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 2.5e-06 58.5 54 57.4
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.3e-06 58.2 29 100.0
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.3e-06 58.2 29 100.0
MELO3C028166.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.5e-06 56.6 29 96.6


User provided reference genes

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