Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 2379.7 1203 100.0
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 2143.6 1204 88.8
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 2132.1 1204 88.9
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 2126.3 1209 87.8
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 2064.7 1138 89.8
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1733.0 1176 71.7
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1729.5 1199 70.4
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1725.3 1206 70.1
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1724.5 1205 69.5
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1716.8 1206 69.7
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1715.3 1205 68.6
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1714.5 1206 69.7
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1712.6 1205 68.6
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1704.1 1245 67.2
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1703.0 1208 69.5
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1696.4 1205 68.0
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1693.3 1197 69.2
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1688.7 1208 68.5
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1685.2 1202 69.4
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1681.4 1200 68.6
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1681.0 1208 68.2
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1674.1 1186 69.1
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1673.7 1206 68.2
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1672.5 1206 68.0
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1667.9 1198 68.9
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1664.0 1208 67.3
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1660.2 1208 66.5
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1657.5 1194 68.2
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1656.7 1187 68.8
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1653.3 1187 68.7
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1652.5 1187 68.6
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1649.4 1196 67.6
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1643.6 1227 65.1
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1634.0 1200 66.2
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1632.5 1187 66.8
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1632.1 1207 66.1
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1631.3 1207 65.7
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1630.2 1195 66.7
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1623.6 1210 65.5
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1620.9 1201 65.3
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1612.0 1210 65.5
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1612.0 1189 66.4
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1607.4 1196 66.1
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1605.9 1190 66.4
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1602.0 1189 66.0
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1601.6 1308 62.2
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1601.3 1184 65.8
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1597.8 1189 65.8
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1595.9 1205 64.8
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1592.8 1198 64.8
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1587.8 1212 64.6
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1586.2 1212 63.3
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1581.2 1202 63.3
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1571.2 1205 63.1
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1570.8 1198 63.9
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1569.7 1197 63.7
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1569.3 1203 63.7
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1562.7 1199 63.4
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1560.0 1214 64.0
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1559.3 1198 63.4
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1558.9 1199 63.1
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1557.3 1193 63.8
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1557.3 1198 62.9
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1552.7 1199 62.5
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1552.7 1199 62.7
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1550.8 1200 62.8
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1550.0 1199 62.6
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1541.9 1193 63.1
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1540.4 1199 63.1
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1540.0 1199 63.1
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1536.9 1196 63.3
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1534.2 1199 63.1
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1530.8 1223 62.1
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1528.1 1248 61.1
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1526.9 1198 62.3
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1525.8 1209 62.1
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1525.0 1160 63.4
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1522.7 1213 61.4
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1520.4 1201 61.8
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1511.9 1204 61.6
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1510.0 1266 59.0
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1494.6 1160 62.4
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1491.1 1016 71.3
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1489.9 1202 61.3
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1481.1 1236 59.5
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1474.9 1199 61.5
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1467.6 1202 60.5
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1460.3 1183 61.5
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1437.2 1205 59.3
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1433.7 1248 58.3
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1399.4 1024 66.8
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1395.6 1287 56.3
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1377.5 1206 56.8
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1369.4 1190 55.5
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1365.1 1204 56.6
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1313.9 975 66.3
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1304.3 987 65.2
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1271.1 1206 56.5
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1240.3 1189 54.6
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1227.6 1187 55.2
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1172.1 1212 49.1
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1170.6 1214 49.2
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1162.9 1213 51.9
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1139.8 1175 48.8
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1132.5 1225 49.1
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1129.0 818 67.6
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.0e-301 1038.5 861 62.4
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 3.3e-287 992.3 758 63.6
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 4.4e-271 938.7 717 65.0
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 1.7e-259 900.2 1068 44.9
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 3.6e-257 892.5 723 61.0
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 1.4e-245 854.0 1096 42.6
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 2.0e-223 780.4 580 64.8
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.2e-215 754.6 1176 39.1
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 1.6e-204 717.6 480 70.2
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.1e-200 704.9 567 62.8
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 8.1e-193 678.7 495 67.5
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 8.4e-190 668.7 758 49.3
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.1e-149 535.4 387 68.2
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 1.5e-133 481.9 416 57.0
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 1.5e-130 471.9 598 47.0
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 2.6e-130 471.1 717 39.9
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 2.0e-98 365.2 279 63.4
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 9.3e-88 329.7 379 47.5
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 7.6e-74 283.5 302 50.7
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 2.2e-57 228.8 276 44.6
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 1.0e-54 219.9 185 60.0
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 3.9e-54 218.0 190 57.9
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 1.1e-51 209.9 280 42.1
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 7.2e-48 197.2 232 46.6
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 2.0e-45 189.1 141 68.1
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 1.8e-27 129.4 150 48.0
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 7.0e-27 127.5 135 54.1
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 4.1e-19 101.7 72 61.1
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 1.6e-15 89.7 202 32.7
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 3.7e-12 78.6 83 49.4
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 1.8e-11 76.3 60 68.3
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 7.0e-11 74.3 128 33.6
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 2.3e-09 69.3 45 73.3
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 1.5e-08 66.6 94 42.6
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 2.8e-07 62.4 64 48.4
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 5.2e-06 58.2 61 49.2
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 5.2e-06 58.2 52 53.8


User provided reference genes

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