Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000233 Sechium edule HOM05D006443 ORTHO05D007797 9.1e-195 683.3 331 100.0
MELO3C011863.2 Cucumis melo HOM05D006443 ORTHO05D007797 3.6e-159 565.1 320 85.3
ClCG11G013630 Citrullus lanatus HOM05D006443 ORTHO05D007797 1.1e-139 500.4 320 77.2
Duzib248G1079 Durio zibethinus HOM05D006443 ORTHO05D007797 6.6e-137 491.1 319 75.2
COL.COLO4_20406 Corchorus olitorius HOM05D006443 ORTHO05D007797 9.6e-136 487.3 319 75.2
Haze_12422 Corylus avellana HOM05D006443 ORTHO05D007797 3.6e-135 485.3 319 74.0
QL03p052624 Quercus lobata HOM05D006443 ORTHO05D007797 1.1e-134 483.8 319 74.0
Prupe.1G225500 Prunus persica HOM05D006443 ORTHO05D007797 3.4e-133 478.8 321 72.6
Gohir.D04G182900 Gossypium hirsutum HOM05D006443 ORTHO05D007797 2.9e-132 475.7 319 73.7
Gorai.012G175900 Gossypium raimondii HOM05D006443 ORTHO05D007797 2.4e-131 472.6 319 73.0
Atru.chr11.2327 Acer truncatum HOM05D006443 ORTHO05D007797 5.4e-131 471.5 319 70.8
Gohir.A04G139700 Gossypium hirsutum HOM05D006443 ORTHO05D007797 5.4e-131 471.5 319 72.7
MD13G1119500 Malus domestica HOM05D006443 ORTHO05D007797 4.6e-130 468.4 321 71.3
TWI36G0197 Tripterygium wilfordii HOM05D006443 ORTHO05D007797 6.0e-130 468.0 320 70.3
Thecc.02G208000 Theobroma cacao HOM05D006443 ORTHO05D007797 2.3e-129 466.1 319 72.4
Cfa009372 Carpinus fangiana HOM05D006443 ORTHO05D007797 8.7e-129 464.2 319 72.4
PGR119G0512 Punica granatum HOM05D006443 ORTHO05D007797 1.9e-128 463.0 321 71.7
RcHm_v2.0_Chr4g0430211 Rosa chinensis HOM05D006443 ORTHO05D007797 2.5e-128 462.6 319 69.3
Eucgr.H04637 Eucalyptus grandis HOM05D006443 ORTHO05D007797 1.3e-127 460.3 320 70.9
FvH4_4g23730 Fragaria vesca HOM05D006443 ORTHO05D007797 2.8e-127 459.1 319 68.3
CiPaw.05G109500 Carya illinoinensis HOM05D006443 ORTHO05D007797 3.6e-127 458.8 319 71.2
Actinidia30647 Actinidia chinensis HOM05D006443 ORTHO05D007797 4.8e-127 458.4 320 71.9
Ciclev10031911m.g Citrus clementina HOM05D006443 ORTHO05D007797 1.4e-126 456.8 319 70.2
Cpa.g.sc43.60 Carica papaya HOM05D006443 ORTHO05D007797 5.3e-126 454.9 319 69.0
GSVIVG01010487001 Vitis vinifera HOM05D006443 ORTHO05D007797 5.3e-126 454.9 319 71.2
CSS0008831 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.2e-125 453.8 320 69.1
CSS0026603 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.2e-125 453.8 320 69.1
FAN22G2300 Fragaria x ananassa HOM05D006443 ORTHO05D007797 7.6e-125 451.1 320 68.1
Manes.13G011800 Manihot esculenta HOM05D006443 ORTHO05D007797 7.6e-125 451.1 310 71.6
THA.LOC104807130 Tarenaya hassleriana HOM05D006443 ORTHO05D007797 8.4e-124 447.6 320 69.4
FAN07G1264 Fragaria x ananassa HOM05D006443 ORTHO05D007797 1.4e-123 446.8 320 67.5
Potri.003G171900 Populus trichocarpa HOM05D006443 ORTHO05D007797 1.9e-123 446.4 320 68.4
HanXRQChr08g0207841 Helianthus annuus HOM05D006443 ORTHO05D007797 2.4e-123 446.0 321 68.8
Sp1g10410 Schrenkiella parvula HOM05D006443 ORTHO05D007797 2.4e-123 446.0 319 68.0
Hma1.2p1_0065F.1_g035440 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 7.1e-123 444.5 319 69.3
Thhalv10008060m.g Eutrema salsugineum HOM05D006443 ORTHO05D007797 1.6e-122 443.4 319 66.8
Sabra03G0125800 Salix brachista HOM05D006443 ORTHO05D007797 1.6e-122 443.4 320 68.4
AL1G22970 Arabidopsis lyrata HOM05D006443 ORTHO05D007797 2.1e-122 443.0 321 67.6
Glyma.18G006200 Glycine max HOM05D006443 ORTHO05D007797 3.5e-122 442.2 321 67.9
AT1G11780 Arabidopsis thaliana HOM05D006443 ORTHO05D007797 4.6e-122 441.8 319 68.0
Phvul.001G262100 Phaseolus vulgaris HOM05D006443 ORTHO05D007797 7.9e-122 441.0 320 67.5
BcaB08g37422 Brassica carinata HOM05D006443 ORTHO05D007797 1.7e-121 439.9 320 66.9
CANSAT01G1158 Cannabis sativa HOM05D006443 ORTHO05D007797 1.7e-121 439.9 320 68.8
Nitab4.5_0001356g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 1.7e-121 439.9 319 66.5
Migut.K00736 Erythranthe guttata HOM05D006443 ORTHO05D007797 3.9e-121 438.7 320 68.1
Nitab4.5_0008905g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 3.9e-121 438.7 319 66.5
Carub.0001s1145 Capsella rubella HOM05D006443 ORTHO05D007797 1.1e-120 437.2 319 66.1
MSTRG.502 Avicennia marina HOM05D006443 ORTHO05D007797 1.5e-120 436.8 320 68.1
BraA09t41778Z Brassica rapa HOM05D006443 ORTHO05D007797 1.5e-120 436.8 319 66.8
Glyma.11G250800 Glycine max HOM05D006443 ORTHO05D007797 2.5e-120 436.0 320 65.6
Nn4g22309 Nelumbo nucifera HOM05D006443 ORTHO05D007797 3.3e-120 435.6 323 66.3
CARHR012120 Cardamine hirsuta HOM05D006443 ORTHO05D007797 4.3e-120 435.3 319 66.8
Peaxi162Scf00359g00713 Petunia axillaris HOM05D006443 ORTHO05D007797 5.6e-120 434.9 319 66.5
Aa31LG1G3790 Aethionema arabicum HOM05D006443 ORTHO05D007797 9.6e-120 434.1 319 66.8
VMungo1383G0397 Vigna mungo HOM05D006443 ORTHO05D007797 2.1e-119 433.0 320 66.2
BcaC07g41759 Brassica carinata HOM05D006443 ORTHO05D007797 4.8e-119 431.8 320 66.6
BolC8t52335H Brassica oleracea HOM05D006443 ORTHO05D007797 4.8e-119 431.8 320 66.6
Sc14g0009070 Simmondsia chinensis HOM05D006443 ORTHO05D007797 4.8e-119 431.8 320 68.1
TPR.G17786 Trifolium pratense HOM05D006443 ORTHO05D007797 3.1e-118 429.1 322 66.1
MBI11_g05329_MAGBIO Magnolia biondii HOM05D006443 ORTHO05D007797 5.3e-118 428.3 321 66.0
Psat5g096400 Pisum sativum HOM05D006443 ORTHO05D007797 5.3e-118 428.3 321 65.7
AUR62005622 Chenopodium quinoa HOM05D006443 ORTHO05D007797 6.9e-118 427.9 315 66.7
AUR62028926 Chenopodium quinoa HOM05D006443 ORTHO05D007797 9.0e-118 427.6 314 67.2
Cc11_g16930 Coffea canephora HOM05D006443 ORTHO05D007797 9.0e-118 427.6 319 67.1
Sopen04g017520 Solanum pennellii HOM05D006443 ORTHO05D007797 1.2e-117 427.2 310 65.8
CAN.G237.4 Capsicum annuum HOM05D006443 ORTHO05D007797 2.0e-117 426.4 319 64.6
Hund06091 Selenicereus undatus HOM05D006443 ORTHO05D007797 2.0e-117 426.4 311 68.2
SGA_v2.0_scaffold9G04677 Striga asiatica HOM05D006443 ORTHO05D007797 2.6e-117 426.0 345 63.2
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 3.4e-117 425.6 322 67.4
Oeu058924.1 Olea europaea HOM05D006443 ORTHO05D007797 3.4e-117 425.6 319 65.5
Solyc04g045590.3 Solanum lycopersicum HOM05D006443 ORTHO05D007797 4.5e-117 425.2 310 65.8
FAN17G1989 Fragaria x ananassa HOM05D006443 ORTHO05D007797 7.6e-117 424.5 371 57.4
Ca_16457_v3 Cicer arietinum L. HOM05D006443 ORTHO05D007797 1.3e-116 423.7 322 65.5
arahy.Tifrunner.gnm1.ann1.DXN1WG Arachis hypogaea HOM05D006443 ORTHO05D007797 1.7e-116 423.3 319 65.5
Aqoxy5G03367 Aquilegia oxysepala HOM05D006443 ORTHO05D007797 3.8e-116 422.2 322 66.1
Medtr3g085290 Medicago truncatula HOM05D006443 ORTHO05D007797 4.9e-116 421.8 321 65.7
CDE05G3615 Ceratophyllum demersum HOM05D006443 ORTHO05D007797 6.4e-116 421.4 319 63.6
arahy.Tifrunner.gnm1.ann1.P16M7J Arachis hypogaea HOM05D006443 ORTHO05D007797 8.4e-116 421.0 319 65.8
Lalb_Chr11g0075761 Lupinus albus HOM05D006443 ORTHO05D007797 9.3e-115 417.5 319 64.6
Actinidia08069 Actinidia chinensis HOM05D006443 ORTHO05D007797 3.5e-114 415.6 322 67.4
Lj6g0022486 Lotus japonicus HOM05D006443 ORTHO05D007797 6.0e-114 414.8 326 63.5
PSO017G6191 Papaver somniferum HOM05D006443 ORTHO05D007797 1.0e-113 414.1 321 63.9
unitig_747.g21126 Utricularia gibba HOM05D006443 ORTHO05D007797 2.3e-113 412.9 320 65.9
PSO478G2155 Papaver somniferum HOM05D006443 ORTHO05D007797 1.9e-112 409.8 320 63.4
vmacro19384 Vaccinium macrocarpon HOM05D006443 ORTHO05D007797 5.6e-112 408.3 318 65.7
EL10Ac6g13506 Beta vulgaris HOM05D006443 ORTHO05D007797 6.9e-110 401.4 334 64.1
Lsat_1_v5_gn_4_56020 Lactuca sativa HOM05D006443 ORTHO05D007797 5.8e-109 398.3 321 62.6
Lj6C827T5 Lonicera japonica HOM05D006443 ORTHO05D007797 2.3e-105 386.3 366 58.5
C08p47970 Brassica napus HOM05D006443 ORTHO05D007797 1.3e-100 370.5 262 67.6
CsaV3_5G030250 Cucumis sativus L. HOM05D006443 ORTHO05D007797 1.3e-100 370.5 210 85.7
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 5.0e-100 368.6 262 67.9
ATR0561G191 Amborella trichopoda HOM05D006443 ORTHO05D007797 1.6e-98 363.6 286 62.9
Zm00001eb169540 Zea mays HOM05D006443 ORTHO05D007797 2.4e-94 349.7 330 56.7
Rhsim12G0099900 Rhododendron simsii HOM05D006443 ORTHO05D007797 8.5e-92 341.3 232 72.8
Dinv17565 Davidia involucrata HOM05D006443 ORTHO05D007797 2.5e-91 339.7 260 65.8
Os11g0488500 Oryza sativa ssp. japonica HOM05D006443 ORTHO05D007797 3.2e-91 339.3 318 55.0
SalBow1G6802 Salvia bowleyana HOM05D006443 ORTHO05D007797 2.5e-88 329.7 256 64.8
SalBow2G0214 Salvia bowleyana HOM05D006443 ORTHO05D007797 2.5e-88 329.7 256 64.8
Mapoly0036s0054 Marchantia polymorpha HOM05D006443 ORTHO05D007797 3.7e-79 299.3 367 46.3
SEGI_28427 Sequoiadendron giganteum HOM05D006443 ORTHO05D007797 8.2e-79 298.1 316 53.8
SMO196G0120 Selaginella moellendorffii HOM05D006443 ORTHO05D007797 3.1e-78 296.2 315 51.7
AagrBONN_evm.TU.Sc2ySwM_228.5822 Anthoceros agrestis HOM05D006443 ORTHO05D007797 6.5e-76 288.5 316 46.5
Pp3c15_20640 Physcomitrium patens HOM05D006443 ORTHO05D007797 4.7e-74 282.3 358 45.0
TAR629G0791 Trochodendron aralioides HOM05D006443 ORTHO05D007797 1.1e-62 244.6 153 74.5
DCAR_031205 Daucus carota HOM05D006443 ORTHO05D007797 4.2e-59 232.6 204 57.8
CSS0019305 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 4.5e-53 212.6 126 79.4
CSS0017614 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.0e-52 211.5 126 78.6
CBR_g32330 Chara braunii HOM05D006443 ORTHO05D007797 4.0e-49 199.5 528 29.4
DCAR_031204 Daucus carota HOM05D006443 ORTHO05D007797 1.2e-48 198.0 124 73.4
Hma1.2p1_0065F.1_g035450 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 3.7e-39 166.4 88 87.5
C08p48190 Brassica napus HOM05D006443 ORTHO05D007797 6.4e-31 139.0 92 69.6
BolC8t52352H Brassica oleracea HOM05D006443 ORTHO05D007797 2.4e-30 137.1 92 68.5
Cre06.g278198 Chlamydomonas reinhardtii HOM05D006443 ORTHO05D007797 7.1e-30 135.6 180 38.9
CSS0022605 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 4.7e-26 122.9 97 64.9
ClCG11G013640 Citrullus lanatus HOM05D006443 ORTHO05D007797 3.8e-23 113.2 54 98.1
FAN12G3107 Fragaria x ananassa HOM05D006443 ORTHO05D007797 4.9e-23 112.8 87 59.8
Rhsim12G0100100 Rhododendron simsii HOM05D006443 ORTHO05D007797 6.6e-20 102.4 101 55.4
PRCOL_00005324 Prasinoderma coloniale HOM05D006443 ORTHO05D007797 1.1e-19 101.7 141 41.1
MCO14G547 Micromonas commoda HOM05D006443 ORTHO05D007797 1.9e-19 100.9 71 57.7
TAR629G0787 Trochodendron aralioides HOM05D006443 ORTHO05D007797 5.8e-16 89.4 73 61.6
C08p46980 Brassica napus HOM05D006443 ORTHO05D007797 4.6e-13 79.7 77 49.4
BolC8t52235H Brassica oleracea HOM05D006443 ORTHO05D007797 4.6e-13 79.7 77 49.4
Cfa001627 Carpinus fangiana HOM05D006443 ORTHO05D007797 7.8e-13 79.0 130 36.2
CSS0049531 Camellia sinensis var. sinensis HOM05D001731 ORTHO05D000001 8.7e-12 75.5 50 72.0
Phvul.001G131400 Phaseolus vulgaris HOM05D003341 ORTHO05D003603 3.1e-09 67.0 150 32.7
CARHR089000 Cardamine hirsuta HOM05D003341 ORTHO05D003603 4.0e-09 66.6 131 36.6
A05p35310 Brassica napus HOM05D003341 ORTHO05D003603 9.0e-09 65.5 147 31.3
BraA05t22341Z Brassica rapa HOM05D003341 ORTHO05D003603 9.0e-09 65.5 147 31.3
Glyma.01G129600 Glycine max HOM05D003341 ORTHO05D003603 4.5e-08 63.2 150 32.0
Cfa003500 Carpinus fangiana HOM05D003341 ORTHO05D003603 5.8e-08 62.8 151 29.1
Psat5g189880 Pisum sativum HOM05D003341 ORTHO05D003603 9.9e-08 62.0 85 40.0
Sed0009033 Sechium edule HOM05D003341 ORTHO05D003603 1.3e-07 61.6 147 30.6
Thecc.04G156400 Theobroma cacao HOM05D003341 ORTHO05D003603 1.3e-07 61.6 150 30.0
FAN02G2897 Fragaria x ananassa HOM05D003341 ORTHO05D003603 2.2e-07 60.8 79 40.5
Migut.J00071 Erythranthe guttata HOM05D003341 ORTHO05D003603 2.9e-07 60.5 82 39.0
AT3G14160 Arabidopsis thaliana HOM05D003341 ORTHO05D003603 3.8e-07 60.1 79 40.5
CARHR089020 Cardamine hirsuta HOM05D003341 ORTHO05D003603 3.8e-07 60.1 125 35.2
vmacro22021 Vaccinium macrocarpon HOM05D003341 ORTHO05D003603 3.8e-07 60.1 128 32.8
BcaC05g29120 Brassica carinata HOM05D003341 ORTHO05D003603 4.9e-07 59.7 147 29.3
C05p53490 Brassica napus HOM05D003341 ORTHO05D003603 4.9e-07 59.7 149 30.9
BolC5t34026H Brassica oleracea HOM05D003341 ORTHO05D003603 4.9e-07 59.7 149 30.9
AUR62006332 Chenopodium quinoa HOM05D003341 ORTHO05D003603 4.9e-07 59.7 153 29.4
FvH4_6g35240 Fragaria vesca HOM05D003341 ORTHO05D003603 4.9e-07 59.7 79 39.2
FAN09G0950 Fragaria x ananassa HOM05D003341 ORTHO05D003603 4.9e-07 59.7 79 39.2
FAN14G1485 Fragaria x ananassa HOM05D003341 ORTHO05D003603 4.9e-07 59.7 79 39.2
VMungo0720G1619 Vigna mungo HOM05D003341 ORTHO05D003603 4.9e-07 59.7 129 32.6
PGR004G1582 Punica granatum HOM05D003341 ORTHO05D003603 6.4e-07 59.3 141 31.2
Hund05719 Selenicereus undatus HOM05D003341 ORTHO05D003603 6.4e-07 59.3 80 41.2
VMungo0331G1094 Vigna mungo HOM05D003341 ORTHO05D003603 6.4e-07 59.3 129 32.6
Aqoxy2G00755 Aquilegia oxysepala HOM05D003341 ORTHO05D003603 8.4e-07 58.9 93 38.7
MSTRG.5521 Avicennia marina HOM05D003341 ORTHO05D003603 8.4e-07 58.9 152 28.3
Sc10g0007940 Simmondsia chinensis HOM05D003341 ORTHO05D003603 8.4e-07 58.9 84 35.7
VMungo0331G2034 Vigna mungo HOM05D003341 ORTHO05D003603 8.4e-07 58.9 129 31.8
AL3G26370 Arabidopsis lyrata HOM05D003341 ORTHO05D003603 1.1e-06 58.5 79 40.5
CSS0017792 Camellia sinensis var. sinensis HOM05D003341 ORTHO05D003603 1.1e-06 58.5 151 29.8
Oeu064882.1 Olea europaea HOM05D003341 ORTHO05D003603 1.1e-06 58.5 84 35.7
RcHm_v2.0_Chr2g0146601 Rosa chinensis HOM05D003341 ORTHO05D003603 1.1e-06 58.5 79 39.2
COL.COLO4_36103 Corchorus olitorius HOM05D003341 ORTHO05D003603 1.4e-06 58.2 149 29.5
MBI15_g40704_MAGBIO Magnolia biondii HOM05D003341 ORTHO05D003603 1.4e-06 58.2 80 40.0
QL05p003212 Quercus lobata HOM05D003341 ORTHO05D003603 1.4e-06 58.2 83 38.6
Carub.0003s1375 Capsella rubella HOM05D003341 ORTHO05D003603 1.9e-06 57.8 79 39.2
Migut.I01109 Erythranthe guttata HOM05D003341 ORTHO05D003603 1.9e-06 57.8 80 40.0
Ah.08g209790 Amaranthus hybridus HOM05D003341 ORTHO05D003603 3.2e-06 57.0 84 35.7
Gohir.D10G118300 Gossypium hirsutum HOM05D003341 ORTHO05D003603 3.2e-06 57.0 147 30.6
Gorai.011G130100 Gossypium raimondii HOM05D003341 ORTHO05D003603 3.2e-06 57.0 147 30.6
arahy.Tifrunner.gnm1.ann1.8PX6PB Arachis hypogaea HOM05D003341 ORTHO05D003603 4.2e-06 56.6 83 37.3
Cfa003499 Carpinus fangiana HOM05D003341 ORTHO05D003603 4.2e-06 56.6 83 37.3
ClCG04G006530 Citrullus lanatus HOM05D003341 ORTHO05D003603 4.2e-06 56.6 79 39.2
Thhalv10020706m.g Eutrema salsugineum HOM05D003341 ORTHO05D003603 4.2e-06 56.6 79 39.2
Ciclev10012606m.g Citrus clementina HOM05D003341 ORTHO05D003603 5.4e-06 56.2 79 38.0
QL05p002051 Quercus lobata HOM05D003341 ORTHO05D003603 5.4e-06 56.2 83 37.3
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 5.4e-06 56.2 80 37.5
VMungo1309G0789 Vigna mungo HOM05D003341 ORTHO05D003603 5.4e-06 56.2 119 32.8
Hma1.2p1_1349F.1_g277370 Hydrangea macrophylla HOM05D003341 ORTHO05D003603 7.1e-06 55.8 79 36.7
Actinidia26012 Actinidia chinensis HOM05D003341 ORTHO05D003603 9.3e-06 55.5 121 33.1
CANSAT56G3367 Cannabis sativa HOM05D003341 ORTHO05D003603 9.3e-06 55.5 99 33.3
CsaV3_4G026990 Cucumis sativus L. HOM05D003341 ORTHO05D003603 9.3e-06 55.5 79 39.2
THA.LOC104823314 Tarenaya hassleriana HOM05D003341 ORTHO05D003603 9.3e-06 55.5 116 31.9
Thecc.06G125900 Theobroma cacao HOM05D003341 ORTHO05D003603 9.3e-06 55.5 83 37.3
TWI14G1117 Tripterygium wilfordii HOM05D003341 ORTHO05D003603 9.3e-06 55.5 80 37.5


User provided reference genes

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