Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 2211.4 1110 100.0
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1351.7 1178 60.7
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1304.7 1178 58.2
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1303.5 1174 60.6
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1294.3 1175 57.0
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1292.7 1176 57.8
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1288.9 1171 58.0
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1256.5 1169 56.5
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1235.7 1182 54.5
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1226.1 1178 54.6
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1225.7 1176 54.2
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1222.6 1167 55.1
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1222.6 1176 53.7
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1215.3 1172 54.4
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1205.3 1180 54.4
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1200.3 1184 53.8
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1196.8 1174 53.6
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1192.6 1394 47.8
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1184.5 1168 52.3
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1183.3 1127 55.2
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1177.5 1166 54.4
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1174.5 1193 52.5
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1173.3 1169 52.2
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1170.6 1188 52.8
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1167.1 1184 52.5
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1166.8 1170 51.5
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1165.2 1134 53.6
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1162.5 1176 52.7
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1158.3 1179 52.3
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1157.9 1181 50.6
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1156.4 1174 54.1
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1156.0 1183 52.3
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1154.4 1183 52.3
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1152.5 1378 48.2
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1149.8 1183 52.0
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1148.3 1175 50.4
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1147.9 1173 51.2
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1147.5 1175 50.5
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1147.1 1185 50.5
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1147.1 1179 51.3
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1146.7 1166 53.1
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1144.8 1222 49.4
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1130.2 1182 50.4
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1124.0 1207 50.2
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1123.6 1175 50.0
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1117.8 1183 51.2
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1116.7 1172 50.1
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1116.7 1178 50.4
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1115.9 1187 51.1
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1115.5 1162 52.8
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1112.4 1172 50.7
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1112.4 1175 51.1
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1110.1 1169 51.8
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1108.6 1170 50.0
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1106.3 1214 48.8
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1102.0 1175 51.5
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1099.7 1170 50.3
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1098.2 1171 50.1
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1098.2 1171 50.3
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1097.8 1170 49.7
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1093.6 1172 49.7
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1090.9 1172 49.7
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1085.9 1169 49.4
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1080.1 1162 49.7
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 8.3e-309 1063.9 1171 48.5
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 8.6e-306 1053.9 1170 49.0
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 1.2e-304 1050.0 1173 48.5
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 1.0e-303 1047.0 1168 48.1
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 1.8e-303 1046.2 1169 48.0
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 9.8e-302 1040.4 1167 48.2
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 1.4e-300 1036.6 1170 47.9
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 1.3e-298 1030.0 1168 47.9
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 8.6e-298 1027.3 1162 50.1
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 9.5e-297 1023.8 1050 50.8
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.2e-294 1016.9 1038 52.1
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 1.5e-294 1016.5 1054 50.5
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 1.3e-285 986.9 1185 45.8
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 9.2e-284 980.7 1135 47.6
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 3.0e-282 975.7 1116 49.0
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 6.6e-282 974.5 1185 46.2
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.8e-271 939.9 1071 48.5
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 1.8e-271 939.9 1180 43.9
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 5.3e-271 938.3 1168 44.8
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 3.3e-265 919.1 1174 44.0
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 1.3e-264 917.1 1213 43.5
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 4.0e-263 912.1 1112 46.7
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.5e-246 857.1 754 61.5
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 1.5e-238 830.5 839 54.8
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.0e-229 801.2 787 55.4
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 7.8e-190 668.7 1075 39.3
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 4.0e-178 629.8 717 49.0
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 1.8e-170 604.4 578 53.8
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 6.9e-162 575.9 757 44.4
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 3.4e-161 573.5 1200 33.6
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 6.0e-150 536.2 430 62.3
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 4.2e-143 513.5 1191 32.4
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 6.3e-131 473.0 463 49.9
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 3.6e-118 430.6 593 42.8
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 2.5e-111 407.9 420 50.2
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 4.2e-111 407.1 421 50.6
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 3.1e-106 391.0 390 52.1
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 9.1e-98 362.8 1093 29.1
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 5.2e-93 347.1 287 59.2
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 1.4e-90 339.0 852 30.2
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.2e-86 325.9 464 37.3
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 1.1e-82 312.8 214 70.1
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 1.1e-69 269.6 184 67.9
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.2e-60 239.6 203 57.6
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-53 215.7 1060 26.2
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 4.0e-53 214.5 308 38.6
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 8.1e-38 163.7 222 43.2
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 5.6e-31 141.0 124 58.1
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 2.4e-26 125.6 153 42.5
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.0e-20 105.9 202 28.2
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 1.2e-17 96.7 452 23.9
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 1.6e-17 96.3 358 23.7
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 7.9e-17 94.0 107 48.6
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 8.7e-16 90.5 56 69.6
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 1.5e-15 89.7 75 65.3
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 1.4e-13 83.2 53 67.9
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 3.8e-11 75.1 59 59.3
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 3.2e-10 72.0 59 55.9
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 2.7e-09 68.9 67 53.7
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 6.7e-08 64.3 48 58.3
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 1.5e-07 63.2 48 58.3


User provided reference genes

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