Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 1.7e-185 652.5 319 100.0
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 4.7e-124 448.4 323 66.6
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 2.4e-120 436.0 317 65.9
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 3.2e-120 435.6 319 66.1
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 5.4e-120 434.9 290 69.0
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 9.3e-120 434.1 313 67.4
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.2e-119 433.7 290 69.0
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 6.0e-119 431.4 324 64.2
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 7.8e-119 431.0 290 69.7
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 2.3e-118 429.5 298 66.8
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 2.5e-117 426.0 287 69.0
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 2.8e-116 422.5 289 68.2
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 4.8e-116 421.8 289 68.2
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 1.4e-115 420.2 290 66.6
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.8e-115 419.9 288 67.7
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.1e-115 419.1 289 67.5
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 5.3e-115 418.3 308 64.9
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 3.4e-114 415.6 289 66.8
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 3.4e-114 415.6 292 65.1
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 5.8e-114 414.8 289 64.0
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 7.6e-114 414.5 288 66.0
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.9e-113 412.5 285 67.7
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.8e-113 412.1 291 66.3
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 4.9e-113 411.8 289 66.4
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 1.4e-112 410.2 298 63.8
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 2.4e-112 409.5 296 65.9
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 5.4e-112 408.3 298 63.8
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 1.2e-111 407.1 314 61.1
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 1.6e-111 406.8 310 61.3
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 2.1e-111 406.4 293 66.6
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 3.5e-111 405.6 288 64.9
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.7e-110 403.3 290 65.9
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 3.0e-110 402.5 322 61.8
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 3.9e-110 402.1 291 66.3
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 3.9e-110 402.1 289 64.0
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.6e-110 401.4 289 64.0
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 8.7e-110 401.0 317 62.1
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 8.7e-110 401.0 288 65.6
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.1e-109 400.6 292 64.0
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 1.9e-109 399.8 287 64.1
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 3.3e-109 399.1 292 63.4
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.6e-108 396.7 319 60.2
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 2.8e-108 396.0 304 62.8
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 8.1e-108 394.4 284 65.1
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.8e-107 393.3 288 63.9
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.8e-107 393.3 285 63.2
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 2.0e-106 389.8 284 65.1
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 9.9e-106 387.5 260 67.7
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.1e-104 384.0 282 64.2
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.4e-104 383.6 286 62.9
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.9e-104 383.3 284 63.7
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 4.2e-104 382.1 292 61.3
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 5.4e-104 381.7 309 61.2
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 5.4e-104 381.7 281 59.8
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 1.2e-103 380.6 253 68.8
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 2.7e-103 379.4 256 65.6
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 3.5e-103 379.0 282 63.1
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 4.6e-103 378.6 253 68.0
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 4.6e-103 378.6 281 63.3
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 3.0e-102 375.9 283 62.2
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 6.7e-102 374.8 304 58.9
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 8.7e-102 374.4 250 67.6
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 8.7e-102 374.4 252 68.3
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.9e-101 373.2 321 57.0
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 4.8e-100 368.6 287 58.2
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 1.1e-99 367.5 287 57.8
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.1e-99 367.5 287 57.8
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 1.4e-99 367.1 315 54.6
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 1.4e-99 367.1 287 59.2
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.8e-99 366.7 306 54.2
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 2.4e-99 366.3 315 54.9
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 4.0e-99 365.5 315 54.6
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 5.3e-99 365.2 307 54.7
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 9.0e-99 364.4 287 56.8
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 2.6e-98 362.8 287 57.1
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 3.4e-98 362.5 287 57.1
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 4.5e-98 362.1 287 57.1
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 8.4e-97 357.8 315 53.0
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 5.5e-96 355.1 315 52.7
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 1.6e-95 353.6 262 60.7
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 6.0e-95 351.7 251 64.1
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 5.1e-94 348.6 223 70.9
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 5.1e-94 348.6 251 64.1
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 6.7e-94 348.2 287 57.8
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.8e-92 342.8 321 55.1
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 7.2e-88 328.2 291 53.3
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 3.5e-87 325.9 267 55.4
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 5.7e-85 318.5 283 57.6
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 1.6e-84 317.0 287 51.9
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.4e-82 309.3 289 52.9
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.3e-81 307.4 289 52.6
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 5.0e-81 305.4 226 63.7
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 4.2e-80 302.4 279 49.8
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.6e-79 300.4 189 71.4
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 2.7e-79 299.7 304 50.3
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.0e-78 297.7 198 67.7
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 5.1e-78 295.4 226 63.3
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.3e-77 292.4 190 70.0
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 1.8e-75 287.0 278 46.8
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 3.4e-74 282.7 188 67.6
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.7e-73 280.4 293 50.2
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 5.0e-73 278.9 302 45.0
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 8.5e-73 278.1 167 75.4
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 3.6e-71 272.7 278 46.4
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 2.0e-66 256.9 154 73.4
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.5e-66 255.8 298 46.3
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.8e-62 243.8 155 69.7
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.9e-56 223.8 245 49.8
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 3.2e-56 223.0 245 49.0
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.6e-55 220.7 187 57.8
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.0e-54 218.0 163 62.6
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 1.7e-52 210.7 236 48.7
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 5.4e-51 205.7 166 59.6
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 1.3e-44 184.5 112 72.3
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 5.4e-43 179.1 124 64.5
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 4.5e-42 176.0 229 44.5
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 7.7e-42 175.3 216 37.0
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 5.0e-41 172.6 314 36.3
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 5.0e-41 172.6 132 62.9
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 4.3e-40 169.5 148 56.8
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 4.3e-40 169.5 195 48.2
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 7.8e-34 148.7 127 57.5
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 8.0e-31 138.7 125 54.4
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 2.0e-29 134.0 79 70.9
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 2.2e-28 130.6 103 64.1
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 4.1e-27 126.3 100 59.0
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 3.5e-26 123.2 100 59.0
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 3.2e-19 100.1 76 56.6
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.0e-17 95.1 65 64.6
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 3.6e-15 86.7 158 36.1
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.6e-13 80.5 69 59.4
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.6e-13 80.5 85 49.4
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 8.4e-12 75.5 69 59.4
AagrBONN_evm.TU.Sc2ySwM_117.823 Anthoceros agrestis HOM05D031523 ORTHO05D026640 3.6e-07 60.1 198 24.2


User provided reference genes

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