Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 7.2e-170 600.5 309 100.0
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 2.3e-91 339.7 189 93.1
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 1.5e-87 327.0 298 58.1
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 9.4e-85 317.8 303 55.1
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 1.4e-83 313.9 308 55.5
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 3.3e-82 309.3 300 56.0
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 1.7e-81 307.0 312 54.8
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 1.7e-81 307.0 305 54.1
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 2.8e-81 306.2 312 52.9
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 1.8e-80 303.5 320 52.2
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 1.8e-80 303.5 303 53.8
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 4.1e-80 302.4 311 54.7
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 1.2e-79 300.8 312 52.9
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 3.4e-79 299.3 296 53.4
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 1.0e-78 297.7 305 53.8
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 2.2e-78 296.6 306 53.9
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 5.0e-78 295.4 311 52.7
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 8.5e-78 294.7 299 52.8
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.4e-77 293.9 294 52.7
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.4e-77 293.9 298 52.7
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.9e-77 293.5 295 52.9
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 2.5e-77 293.1 297 54.9
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 7.2e-77 291.6 307 54.1
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 1.2e-76 290.8 306 52.0
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.8e-75 287.0 306 50.7
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 2.3e-75 286.6 223 63.2
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 3.0e-75 286.2 319 50.2
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 3.0e-75 286.2 305 53.1
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 1.1e-74 284.3 297 52.9
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 4.4e-74 282.3 297 52.5
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 7.4e-74 281.6 301 52.5
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 7.4e-74 281.6 321 48.9
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 2.2e-73 280.0 299 51.5
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 4.1e-72 275.8 308 49.4
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 7.0e-72 275.0 311 48.9
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 1.2e-71 274.2 265 56.6
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 1.2e-71 274.2 304 50.7
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 1.6e-71 273.9 301 50.8
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 2.0e-71 273.5 308 49.0
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 2.6e-71 273.1 298 49.3
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 4.5e-71 272.3 311 48.2
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 1.0e-70 271.2 311 47.9
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 6.5e-70 268.5 223 60.1
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 8.5e-70 268.1 280 55.0
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 8.5e-70 268.1 298 47.7
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 2.5e-69 266.5 296 51.4
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 4.2e-69 265.8 283 52.7
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 7.2e-69 265.0 293 50.9
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 7.2e-69 265.0 299 50.2
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 9.4e-69 264.6 297 50.2
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 1.6e-68 263.8 304 49.7
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 3.6e-68 262.7 296 49.3
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 3.6e-68 262.7 300 47.7
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 4.7e-68 262.3 296 49.7
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 5.2e-67 258.8 296 48.6
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 6.7e-67 258.5 314 49.4
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 7.5e-66 255.0 310 46.8
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 1.3e-65 254.2 303 48.2
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.3e-65 254.2 285 50.9
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.7e-65 253.8 286 49.7
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 1.7e-65 253.8 292 49.3
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 2.2e-65 253.4 285 50.9
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 1.1e-64 251.1 305 50.2
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 1.1e-64 251.1 271 53.5
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.4e-64 250.8 304 48.4
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 3.1e-64 249.6 314 46.2
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 1.6e-63 247.3 309 46.3
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 3.5e-63 246.1 304 47.0
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 2.2e-62 243.4 297 46.5
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 3.8e-62 242.7 298 46.3
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 1.9e-61 240.4 226 54.4
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 2.1e-60 236.9 290 46.9
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 1.4e-59 234.2 280 48.6
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 1.8e-59 233.8 302 46.0
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 6.8e-59 231.9 311 45.0
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 1.5e-58 230.7 235 53.6
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 2.0e-58 230.3 301 46.2
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 2.6e-58 229.9 310 45.5
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 7.5e-58 228.4 301 41.9
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 1.7e-57 227.3 296 45.9
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 2.2e-57 226.9 312 44.2
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 2.8e-57 226.5 223 52.0
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 4.8e-57 225.7 248 51.6
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 1.1e-56 224.6 214 55.1
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 3.5e-55 219.5 308 43.5
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 1.0e-54 218.0 232 54.3
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 1.0e-54 218.0 283 45.9
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 1.1e-53 214.5 242 50.4
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 1.5e-53 214.2 238 50.0
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 4.2e-53 212.6 307 42.7
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 4.7e-52 209.1 288 40.6
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 1.0e-51 208.0 278 45.7
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 2.3e-51 206.8 247 46.2
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 1.5e-50 204.1 275 45.8
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 4.4e-50 202.6 185 55.7
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 3.7e-49 199.5 289 40.5
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 1.4e-48 197.6 299 39.5
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 1.0e-46 191.4 311 39.9
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 6.6e-46 188.7 268 43.7
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 1.9e-45 187.2 263 42.2
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 2.8e-44 183.3 303 38.3
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 3.0e-43 179.9 220 43.6
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.2e-42 177.9 132 62.9
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 3.4e-42 176.4 237 44.7
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 4.4e-42 176.0 264 41.7
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 1.8e-40 170.6 126 65.1
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 1.7e-38 164.1 196 49.5
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.0e-38 163.3 182 50.0
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 4.1e-32 142.9 306 33.0
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 4.6e-31 139.4 291 35.1
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 1.1e-29 134.8 191 42.9
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 3.3e-29 133.3 110 58.2
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.3e-29 133.3 292 36.0
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 1.1e-27 128.3 228 35.5
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 2.3e-27 127.1 103 60.2
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 2.2e-25 120.6 294 29.6
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 2.9e-25 120.2 268 34.7
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 6.0e-23 112.5 123 47.2
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 4.3e-21 106.3 192 34.9
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 2.3e-19 100.5 89 56.2
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 3.4e-18 96.7 112 46.4
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 7.6e-18 95.5 66 69.7
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 7.6e-18 95.5 66 69.7
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 6.0e-15 85.9 190 32.1
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 9.6e-13 78.6 73 53.4
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 1.1e-08 65.1 153 28.1
COL.COLO4_27076 Corchorus olitorius HOM05D005876 ORTHO05D007326 5.4e-08 62.8 98 39.8
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 9.3e-08 62.0 121 34.7


User provided reference genes

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