Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0002050 Simmondsia chinensis HOM05D001007 ORTHO05D006705 9.4e-50 199.9 102 100.0
CSS0032887 Camellia sinensis var. sinensis HOM05D001007 ORTHO05D006705 1.7e-11 72.8 38 89.5
Sc12g0000990 Simmondsia chinensis HOM05D001007 ORTHO05D006705 1.5e-10 69.7 36 86.1
Sc15g0002980 Simmondsia chinensis HOM05D027876 ORTHO05D388469 2.5e-10 68.9 39 84.6
Actinidia25132 Actinidia chinensis HOM05D001007 ORTHO05D006705 3.3e-10 68.6 36 86.1
Lj2A1128G41 Lonicera japonica HOM05D001007 ORTHO05D006705 3.3e-10 68.6 38 81.6
Potri.009G041200 Populus trichocarpa HOM05D001007 ORTHO05D006705 4.3e-10 68.2 38 81.6
Sabra09G0029000 Salix brachista HOM05D001007 ORTHO05D006705 9.5e-10 67.0 38 78.9
Cpa.g.sc112.71 Carica papaya HOM05D001007 ORTHO05D006705 1.6e-09 66.2 38 76.3
Haze_24239 Corylus avellana HOM05D001007 ORTHO05D006705 1.6e-09 66.2 38 78.9
AUR62001703 Chenopodium quinoa HOM05D001007 ORTHO05D006705 2.1e-09 65.9 46 67.4
EL10Ac7g16109 Beta vulgaris HOM05D001007 ORTHO05D006705 2.8e-09 65.5 54 61.1
Lsat_1_v5_gn_4_65480 Lactuca sativa HOM05D001007 ORTHO05D006705 2.8e-09 65.5 38 73.7
Ah.08g220450 Amaranthus hybridus HOM05D001007 ORTHO05D006705 3.6e-09 65.1 54 61.1
CAN.G538.2 Capsicum annuum HOM05D001007 ORTHO05D006705 3.6e-09 65.1 46 67.4
Cc01_g13740 Coffea canephora HOM05D001007 ORTHO05D006705 3.6e-09 65.1 38 73.7
DCAR_015644 Daucus carota HOM05D001007 ORTHO05D006705 4.7e-09 64.7 43 72.1
arahy.Tifrunner.gnm1.ann1.MGB2DA Arachis hypogaea HOM05D001007 ORTHO05D006705 1.1e-08 63.5 38 76.3
arahy.Tifrunner.gnm1.ann1.SSF8HC Arachis hypogaea HOM05D001007 ORTHO05D006705 1.1e-08 63.5 38 76.3
COL.COLO4_19087 Corchorus olitorius HOM05D001007 ORTHO05D006705 1.1e-08 63.5 38 76.3
TWI79G0297 Tripterygium wilfordii HOM05D001007 ORTHO05D006705 1.1e-08 63.5 38 76.3
VMungo0540G2128 Vigna mungo HOM05D001007 ORTHO05D006705 1.4e-08 63.2 36 77.8
Cfa011634 Carpinus fangiana HOM05D001007 ORTHO05D006705 1.8e-08 62.8 38 76.3
Atru.chr3.4061 Acer truncatum HOM05D001007 ORTHO05D006705 2.3e-08 62.4 38 73.7
MELO3C020571.2 Cucumis melo HOM05D001007 ORTHO05D006705 3.1e-08 62.0 38 71.1
CsaV3_1G035960 Cucumis sativus L. HOM05D001007 ORTHO05D006705 3.1e-08 62.0 38 71.1
Nitab4.5_0000880g0030 Nicotiana tabacum HOM05D001007 ORTHO05D006705 3.1e-08 62.0 36 75.0
Nitab4.5_0002405g0030 Nicotiana tabacum HOM05D001007 ORTHO05D006705 3.1e-08 62.0 36 75.0
Psat5g162480 Pisum sativum HOM05D001007 ORTHO05D006705 3.1e-08 62.0 61 50.8
Thecc.09G307300 Theobroma cacao HOM05D001007 ORTHO05D006705 3.1e-08 62.0 38 73.7
HanXRQChr10g0294221 Helianthus annuus HOM05D001007 ORTHO05D006705 4.0e-08 61.6 38 65.8
GSVIVG01024808001 Vitis vinifera HOM05D001007 ORTHO05D006705 4.0e-08 61.6 36 75.0
Manes.01G165300 Manihot esculenta HOM05D001007 ORTHO05D006705 5.2e-08 61.2 38 71.1
MSTRG.18565 Avicennia marina HOM05D001007 ORTHO05D006705 6.8e-08 60.8 38 71.1
Peaxi162Scf00842g00018 Petunia axillaris HOM05D001007 ORTHO05D006705 6.8e-08 60.8 46 60.9
Phvul.006G063900 Phaseolus vulgaris HOM05D001007 ORTHO05D006705 6.8e-08 60.8 36 75.0
Solyc06g005990.4 Solanum lycopersicum HOM05D001007 ORTHO05D006705 6.8e-08 60.8 46 60.9
Sopen06g001970 Solanum pennellii HOM05D001007 ORTHO05D006705 6.8e-08 60.8 46 60.9
Ca_14897_v3 Cicer arietinum L. HOM05D001007 ORTHO05D006705 8.9e-08 60.5 61 49.2
Duzib170G0956 Durio zibethinus HOM05D001007 ORTHO05D006705 8.9e-08 60.5 38 73.7
QL01p027375 Quercus lobata HOM05D001007 ORTHO05D006705 8.9e-08 60.5 38 68.4
MD03G1077900 Malus domestica HOM05D001007 ORTHO05D006705 1.2e-07 60.1 38 71.1
Prupe.6G062900 Prunus persica HOM05D001007 ORTHO05D006705 1.2e-07 60.1 38 71.1
FvH4_3g37880 Fragaria vesca HOM05D001007 ORTHO05D006705 1.5e-07 59.7 38 73.7
FAN11G3969 Fragaria x ananassa HOM05D001007 ORTHO05D006705 1.5e-07 59.7 38 73.7
FAN21G1509 Fragaria x ananassa HOM05D001007 ORTHO05D006705 1.5e-07 59.7 38 73.7
FAN25G0707 Fragaria x ananassa HOM05D001007 ORTHO05D006705 1.5e-07 59.7 38 73.7
Glyma.18G067400 Glycine max HOM05D001007 ORTHO05D006705 1.5e-07 59.7 36 72.2
RcHm_v2.0_Chr5g0068091 Rosa chinensis HOM05D001007 ORTHO05D006705 1.5e-07 59.7 38 73.7
SHI05888 Sapria himalayana HOM05D001007 ORTHO05D006705 1.5e-07 59.7 38 68.4
Sed0027946 Sechium edule HOM05D001007 ORTHO05D006705 1.5e-07 59.7 38 71.1
Gohir.A03G048400 Gossypium hirsutum HOM05D001007 ORTHO05D006705 2.0e-07 59.3 38 71.1
Gohir.D03G118700 Gossypium hirsutum HOM05D001007 ORTHO05D006705 2.0e-07 59.3 38 71.1
vmacro02999 Vaccinium macrocarpon HOM05D001007 ORTHO05D006705 2.0e-07 59.3 36 75.0
ClCG03G000980 Citrullus lanatus HOM05D001007 ORTHO05D006705 2.6e-07 58.9 38 68.4
Gorai.003G125100 Gossypium raimondii HOM05D001007 ORTHO05D006705 2.6e-07 58.9 38 71.1
Rhsim13G0073900 Rhododendron simsii HOM05D001007 ORTHO05D006705 2.6e-07 58.9 36 72.2
Hma1.2p1_0227F.1_g096160 Hydrangea macrophylla HOM05D001007 ORTHO05D006705 3.4e-07 58.5 38 71.1
Lj6g0017433 Lotus japonicus HOM05D001007 ORTHO05D006705 3.4e-07 58.5 38 63.2
Medtr3g462290 Medicago truncatula HOM05D001007 ORTHO05D006705 3.4e-07 58.5 61 47.5
Migut.D00864 Erythranthe guttata HOM05D001007 ORTHO05D006705 5.8e-07 57.8 38 65.8
Eucgr.B02279 Eucalyptus grandis HOM05D001007 ORTHO05D006705 7.5e-07 57.4 36 72.2
Lalb_Chr20g0115061 Lupinus albus HOM05D001007 ORTHO05D006705 9.8e-07 57.0 36 69.4
TPR.G30104 Trifolium pratense HOM05D001007 ORTHO05D006705 9.8e-07 57.0 38 60.5
CANSAT54G2449 Cannabis sativa HOM05D001007 ORTHO05D006705 1.3e-06 56.6 38 68.4
Aqoxy1G00722 Aquilegia oxysepala HOM05D001007 ORTHO05D006705 1.7e-06 56.2 61 45.9
ECA234G1277 Erigeron canadensis HOM05D001007 ORTHO05D006705 1.7e-06 56.2 35 65.7
Oeu035015.2 Olea europaea HOM05D001007 ORTHO05D006705 2.2e-06 55.8 36 69.4
CiPaw.13G082700 Carya illinoinensis HOM05D001007 ORTHO05D006705 2.9e-06 55.5 38 65.8
Nn2g11355 Nelumbo nucifera HOM05D001007 ORTHO05D006705 3.7e-06 55.1 38 60.5
SGA_v2.0_scaffold20G09308 Striga asiatica HOM05D001007 ORTHO05D006705 3.7e-06 55.1 38 65.8
Thhalv10010069m.g Eutrema salsugineum HOM05D001007 ORTHO05D006705 6.4e-06 54.3 35 65.7
TAR369G0542 Trochodendron aralioides HOM05D001007 ORTHO05D006705 8.3e-06 53.9 38 60.5


User provided reference genes

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