Gene: Solyc06g005990.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g005990.4
  • Transcript Identifier Solyc06g005990.4.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 998835-1016912 : positive

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g005990.4.1
  • uniprot A0A3Q7GRN6
  • gene_id Solyc06g005990

Descriptions

  • Description ATP-dependent RNA helicase SKI2 (AHRD V3.3 *** A0A2G3C566_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006401
IBA
IEA
GOA DatabaseRNA catabolic process
GO:0006401
IEA
InterProRNA catabolic process
GO:0035864
ISO
PLAZA Integrative Orthologyresponse to potassium ion AT3G46960
GO:0016441
ISO
PLAZA Integrative Orthologyposttranscriptional gene silencing AT3G46960
GO:0090065
ISO
PLAZA Integrative Orthologyregulation of production of siRNA involved in RNA interference AT3G46960
GO:0000292
ISO
PLAZA Integrative OrthologyRNA fragment catabolic process AT3G46960
GO:1904278
ISO
PLAZA Integrative Orthologypositive regulation of wax biosynthetic process AT3G46960
GO:0006813
ISO
PLAZA Integrative Orthologypotassium ion transport AT3G46960
GO:0070478
IBA
GOA Databasenuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
IBA
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IEA
InterProRNA helicase activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT3G46960
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G46960
GO:0055087
IBA
GOA DatabaseSki complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR040801 Ski2, N-terminal domain
IPR025696 rRNA-processing arch domain
IPR011545 DEAD/DEAH box helicase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR016438 ATP-dependent RNA helicase Ski2-like
Mapman id Description
35.1 not assigned.annotated