Gene: Lsat_1_v5_gn_4_65480

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_4_65480
  • Transcript Identifier Lsat_1_v5_gn_4_65480.1
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_4 : 103401561-103407601 : negative

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_4_65480.v5
  • pacid 38933214

Descriptions

  • Description K12599 - antiviral helicase SKI2 (SKI2, SKIV2L)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1904278
ISO
PLAZA Integrative Orthologypositive regulation of wax biosynthetic process AT3G46960
GO:0090065
ISO
PLAZA Integrative Orthologyregulation of production of siRNA involved in RNA interference AT3G46960
GO:0006401
ISO
PLAZA Homology (enrichment)RNA catabolic process HOM05D001007
GO:0006813
ISO
PLAZA Integrative Orthologypotassium ion transport AT3G46960
GO:0000292
ISO
PLAZA Integrative OrthologyRNA fragment catabolic process AT3G46960
GO:0070478
ISO
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay AT3G46960
GO:0016441
ISO
PLAZA Integrative Orthologyposttranscriptional gene silencing AT3G46960
GO:0035864
ISO
PLAZA Integrative Orthologyresponse to potassium ion AT3G46960

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003723
ISO
PLAZA Homology (enrichment)RNA binding HOM05D001007
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity AT3G46960

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0055087
ISO
PLAZA Integrative OrthologySki complex AT3G46960
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT3G46960
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G46960

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
IPR040801 Ski2, N-terminal domain
Mapman id Description
35.1 not assigned.annotated